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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_017458Protein BCCIP homolog; Belongs to the BCP1 family. (300 aa)    
Predicted Functional Partners:
SMAX5B_006124
Putative 60S ribosomal protein L23-like isoform 2; Belongs to the universal ribosomal protein uL14 family.
    
 
 0.938
SMAX5B_001315
Brix domain-containing protein 1 isoform 2.
   
  
 0.898
SMAX5B_013882
Putative ribosome biogenesis protein BRX1-like.
   
    0.877
SMAX5B_021659
Putative MKI67 FHA domain-interacting nucleolar phosphoprotein.
   
    0.861
ENSSMAP00000000460
WD repeat domain 12.
   
   0.860
SMAX5B_022461
Putative rRNA-processing protein EBP2.
   
    0.853
ENSSMAP00000023593
MRT4 homolog, ribosome maturation factor.
   
    0.845
ENSSMAP00000020596
IMP U3 small nucleolar ribonucleoprotein 4.
   
    0.840
EIF6
Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.
    
 
 0.831
SMAX5B_008739
DNA-directed RNA polymerases I and III subunit RPAC1.
   
   0.820
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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