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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_003688Putative transmembrane protein 141. (125 aa)    
Predicted Functional Partners:
ENSSMAP00000012986
Transmembrane protein 244.
      
 0.590
SMAX5B_014260
tRNA pseudouridine synthase.
      
 0.538
ENSSMAP00000014894
Zinc finger and BTB domain containing 4.
      
 0.531
SMAX5B_015181
Putative 14 kDa phosphohistidine phosphatase.
   
  
 0.527
ENSSMAP00000024861
annotation not available
   
  
 0.525
SMAX5B_009327
Putative neutral alpha-glucosidase AB isoform 5; Belongs to the glycosyl hydrolase 31 family.
      
 0.508
SMAX5B_012029
Putative transmembrane protein 244-like isoform 3.
      
 0.461
EIF3F
Eukaryotic translation initiation factor 3 subunit F; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
      
 0.431
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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