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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_009855Putative RNA-binding protein 28. (439 aa)    
Predicted Functional Partners:
SMAX5B_021659
Putative MKI67 FHA domain-interacting nucleolar phosphoprotein.
   
 
 0.981
SMAX5B_000267
Putative ATP-dependent RNA helicase DDX24 isoform 2.
   
 
 0.979
SMAX5B_005573
Putative ATP-dependent RNA helicase DDX27; Belongs to the DEAD box helicase family.
   
 
 0.976
SMAX5B_000156
Putative CCAAT/enhancer-binding protein zeta-like.
   
 
 0.975
SMAX5B_021191
Putative RNA-binding protein 34.
   
 
 0.974
SMAX5B_018012
Putative RRP12-like protein.
   
 
 0.973
SMAX5B_002968
Putative pumilio domain-containing protein KIAA0020-like.
   
 
 0.973
SMAX5B_019505
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.971
SMAX5B_014880
Putative nucleolar complex protein 2-like.
   
 
 0.971
SMAX5B_001798
Uncharacterized protein.
   
 0.967
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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