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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_016662AHD domain-containing protein. (666 aa)    
Predicted Functional Partners:
ENSSMAP00000011182
Cyclin-dependent kinase 9 (CDC2-related kinase).
    
 0.930
SMAX5B_013985
Putative AF4/FMR2 family member 1.
    
 0.920
SMAX5B_001282
DNA-directed RNA polymerase II subunit RPB3 isoform 2.
   
 0.919
ENSSMAP00000007658
AF4/FMR2 family, member 4.
    
 0.919
SMAX5B_020773
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
   
 0.906
SMAX5B_005323
ELL associated factor 1.
   
 0.903
SMAX5B_005568
RNA_pol_L_2 domain-containing protein.
   
 0.893
GTF2F2
General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.
   
 0.865
ENSSMAP00000019576
General transcription factor IIF, polypeptide 2a.
   
 0.865
SMAX5B_001172
Putative ELL-associated factor 2.
   
 0.861
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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