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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_019406Putative RNA-binding protein 27. (999 aa)    
Predicted Functional Partners:
ZFC3H1
Putative zinc finger C3H1 domain-containing protein.
   
 
 0.782
SMAX5B_001736
Pabpn1 protein isoform 2.
    
 
 0.655
PABPN1L
Putative embryonic polyadenylate-binding protein 2-B-like isoform 2.
    
 
 0.655
SMAX5B_013955
Superkiller viralicidic activity 2-like 2.
   
 
 0.625
SMAX5B_020170
RNA-binding protein with serine-rich domain 1.
    
 
 0.551
SMAX5B_020962
Putative RNA-binding protein with serine-rich domain 1.
    
 
 0.551
SMAX5B_015912
Putative helicase SKI2W.
   
 
 0.537
YTHDF1
Putative YTH domain family protein 1-like.
   
 
 0.483
SMAX5B_000985
Putative YTH domain family protein 1.
   
 
 0.483
SMAX5B_002065
Putative YTH domain-containing family protein 3.
   
 
 0.479
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.