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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSMAP00000006902Ubiquitin specific peptidase 19. (1575 aa)    
Predicted Functional Partners:
SMAX5B_005587
Putative E3 ubiquitin-protein ligase RNF123; Belongs to the aldehyde dehydrogenase family.
   
 0.827
TRAF6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.739
SMAX5B_014472
Putative baculoviral IAP repeat-containing protein 7-like.
    
 0.730
ENSSMAP00000016007
Baculoviral IAP repeat containing 2.
    
 0.730
SMAX5B_010392
Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.
   
  0.711
SMAX5B_006690
Putative ubiquitin carboxyl-terminal hydrolase 7; Belongs to the peptidase C19 family.
   
 
0.711
ENSSMAP00000017446
Mitochondrial ribosomal protein S9.
   
 
 0.685
SMAX5B_015620
Putative 39S ribosomal protein L3 mitochondrial; Belongs to the universal ribosomal protein uL3 family.
   
 
 0.682
SMAX5B_009445
Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.680
SMAX5B_020723
40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.
    
 
 0.677
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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