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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSMAP00000006934SLU7 homolog, splicing factor. (571 aa)    
Predicted Functional Partners:
SMAX5B_012502
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16.
   
 0.999
ENSSMAP00000008678
PRP18 pre-mRNA processing factor 18 homolog (yeast).
  
 0.999
SMAX5B_019672
Putative pre-mRNA-processing factor 17.
   
 0.999
SMAX5B_018533
Putative pre-mRNA-splicing factor CWC22-like.
   
 0.998
SMAX5B_008733
Putative cell division cycle 5-like protein.
   
 
 0.997
SMAX5B_011043
U5 small nuclear ribonucleoprotein 200 kDa helicase.
    
 
 0.997
SMAX5B_000139
Putative crooked neck-like protein 1.
   
 
 0.997
SMAX5B_003453
Pre-mRNA-splicing factor syf2.
   
 0.997
SMAX5B_013355
Putative pre-mRNA-processing-splicing factor 8.
    
 
 0.997
SMAX5B_006240
BUD31 C77604.
    
 
 0.996
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.