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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_014725Homeobox protein Hox-C13a. (306 aa)    
Predicted Functional Partners:
SMAX5B_013439
Putative forkhead box protein N1.
   
 
 0.617
SMAX5B_011571
Putative lymphoid enhancer-binding factor 1-like.
    
 
 0.574
SMAX5B_016580
Putative forkhead box protein N4-like.
   
 
 0.518
SMAX5B_008613
HoxD4b.
   
 
0.480
SMAX5B_015023
Homeobox protein HoxC4aa.
   
 
0.478
SMAX5B_019362
Putative homeobox protein MSH-D-like.
   
  
0.475
SMAX5B_020827
Pbx4 homeodomain protein.
    
 
 0.466
ENSSMAP00000005528
pre-B-cell leukemia homeobox 1b.
    
 
 0.466
SMAX5B_010831
Pre-B-cell leukemia transcription factor 3.
    
 
 0.466
SMAX5B_013994
Pre-B-cell leukemia transcription factor 2.
    
 
 0.466
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.