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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TRPM1Putative transient receptor potential cation channel subfamily M member 1-like. (1578 aa)    
Predicted Functional Partners:
SMAX5B_021070
Putative ADP-ribose pyrophosphatase mitochondrial.
 
   
 0.875
SMAX5B_009532
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
  0.657
SMAX5B_000179
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
  0.657
ENSSMAP00000003580
Protein phosphatase 1 catalytic subunit beta.
    
  0.657
SMAX5B_011189
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
  0.657
SMAX5B_020337
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
  0.657
PP1cb
Serine/threonine-protein phosphatase; Belongs to the PPP phosphatase family.
    
  0.657
SMAX5B_018415
Putative transient receptor potential cation channel subfamily M member 2.
     
0.607
SMAX5B_016510
Putative transient receptor potential cation channel subfamily V member 4; Belongs to the transient receptor (TC 1.A.4) family.
   
 
 0.573
SMAX5B_004188
Putative transient receptor potential cation channel subfamily V member 1-like; Belongs to the transient receptor (TC 1.A.4) family.
   
 
 0.572
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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