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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_006542Nucleolar protein 12. (237 aa)    
Predicted Functional Partners:
SMAX5B_013882
Putative ribosome biogenesis protein BRX1-like.
   
 
 0.988
SMAX5B_021659
Putative MKI67 FHA domain-interacting nucleolar phosphoprotein.
   
 
 0.987
SMAX5B_022461
Putative rRNA-processing protein EBP2.
   
 
 0.983
FTSJ3
pre-rRNA processing protein FTSJ3; Probable methyltransferase involved in the processing of the 34S pre-rRNA to 18S rRNA and in 40S ribosomal subunit formation. Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily.
   
 
 0.969
ENSSMAP00000023593
MRT4 homolog, ribosome maturation factor.
   
 
 0.967
SMAX5B_010103
Putative ribosome biogenesis protein RLP24.
   
 
 0.965
SMAX5B_019505
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.957
ENSSMAP00000017055
DEAD (Asp-Glu-Ala-Asp) box polypeptide 55.
   
 
 0.956
SMAX5B_020367
Putative ribosomal L1 domain-containing protein 1 isoform 2.
   
 
 0.949
SMAX5B_021692
RNA helicase.
   
 
 0.937
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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