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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_020021Putative zinc finger CCHC domain-containing protein 4. (494 aa)    
Predicted Functional Partners:
SMAX5B_017649
Putative acyl-CoA synthetase family member 4.
   
    0.853
SMAX5B_011022
Nucleolar protein 6.
   
    0.837
SMAX5B_011599
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
    0.821
SMAX5B_010940
Putative mediator of RNA polymerase II transcription subunit 22 isoform 5.
   
    0.821
SMAX5B_016810
Putative 39S ribosomal protein L2 mitochondrial.
   
    0.821
SMAX5B_019145
Putative prefoldin subunit 6.
   
    0.821
SMAX5B_009217
Pre-mRNA-splicing factor 38A.
   
    0.821
SMAX5B_018384
Sec34 domain containing protein.
   
    0.821
SMAX5B_015080
GPN-loop GTPase 3; Small GTPase required for proper nuclear import of RNA polymerase II and III (RNAPII and RNAPIII). May act at an RNAP assembly step prior to nuclear import; Belongs to the GPN-loop GTPase family.
   
    0.821
SMAX5B_007794
DUF2151 domain containing protein.
   
    0.789
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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