SMAX5B_018080 protein (Scophthalmus maximus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMAX5B_018080

Putative inhibitor of nuclear factor kappa-B kinase subunit alpha. (734 aa)

Predicted Functional Partners:

SMAX5B_012163

0.978

SMAX5B_008336

0.972

SMAX5B_003479

0.972

SMAX5B_007873

0.971

SMAX5B_019418

0.961

SMAX5B_015288

0.950

SMAX5B_017229

0.947

SMAX5B_021142

0.947

SMAX5B_008790

0.944

SMAX5B_020557

0.944

Your Current Organism:

Scophthalmus maximus

NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMAX5B_003479	SMAX5B_007873	ENSSMAP00000018561	ENSSMAP00000002551	Inhibitor kappa B alpha.	Putative RING-H2 finger protein ATL58-like.	0.406
SMAX5B_003479	SMAX5B_008336	ENSSMAP00000018561	ENSSMAP00000007063	Inhibitor kappa B alpha.	I kappa B alpha isoform 2.	0.847
SMAX5B_003479	SMAX5B_008790	ENSSMAP00000018561	ENSSMAP00000009752	Inhibitor kappa B alpha.	Putative mitogen-activated protein kinase kinase kinase 14-like.	0.633
SMAX5B_003479	SMAX5B_012163	ENSSMAP00000018561	ENSSMAP00000018774	Inhibitor kappa B alpha.	Putative tumor necrosis factor receptor superfamily member 1A-like.	0.440
SMAX5B_003479	SMAX5B_015288	ENSSMAP00000018561	ENSSMAP00000002000	Inhibitor kappa B alpha.	Putative NF-kappa-B essential modulator.	0.906
SMAX5B_003479	SMAX5B_017229	ENSSMAP00000018561	ENSSMAP00000009743	Inhibitor kappa B alpha.	Uncharacterized protein.	0.978
SMAX5B_003479	SMAX5B_018080	ENSSMAP00000018561	ENSSMAP00000008082	Inhibitor kappa B alpha.	Putative inhibitor of nuclear factor kappa-B kinase subunit alpha.	0.972
SMAX5B_003479	SMAX5B_019418	ENSSMAP00000018561	ENSSMAP00000003662	Inhibitor kappa B alpha.	Putative mitogen-activated protein kinase kinase kinase 7-like isoform 2.	0.527
SMAX5B_003479	SMAX5B_020557	ENSSMAP00000018561	ENSSMAP00000017498	Inhibitor kappa B alpha.	Putative mitogen-activated protein kinase kinase kinase 14-like.	0.633
SMAX5B_003479	SMAX5B_021142	ENSSMAP00000018561	ENSSMAP00000012926	Inhibitor kappa B alpha.	NF-kappaB 2.	0.967
SMAX5B_007873	SMAX5B_003479	ENSSMAP00000002551	ENSSMAP00000018561	Putative RING-H2 finger protein ATL58-like.	Inhibitor kappa B alpha.	0.406
SMAX5B_007873	SMAX5B_008336	ENSSMAP00000002551	ENSSMAP00000007063	Putative RING-H2 finger protein ATL58-like.	I kappa B alpha isoform 2.	0.406
SMAX5B_007873	SMAX5B_015288	ENSSMAP00000002551	ENSSMAP00000002000	Putative RING-H2 finger protein ATL58-like.	Putative NF-kappa-B essential modulator.	0.956
SMAX5B_007873	SMAX5B_017229	ENSSMAP00000002551	ENSSMAP00000009743	Putative RING-H2 finger protein ATL58-like.	Uncharacterized protein.	0.406
SMAX5B_007873	SMAX5B_018080	ENSSMAP00000002551	ENSSMAP00000008082	Putative RING-H2 finger protein ATL58-like.	Putative inhibitor of nuclear factor kappa-B kinase subunit alpha.	0.971
SMAX5B_007873	SMAX5B_019418	ENSSMAP00000002551	ENSSMAP00000003662	Putative RING-H2 finger protein ATL58-like.	Putative mitogen-activated protein kinase kinase kinase 7-like isoform 2.	0.732
SMAX5B_007873	SMAX5B_021142	ENSSMAP00000002551	ENSSMAP00000012926	Putative RING-H2 finger protein ATL58-like.	NF-kappaB 2.	0.406
SMAX5B_008336	SMAX5B_003479	ENSSMAP00000007063	ENSSMAP00000018561	I kappa B alpha isoform 2.	Inhibitor kappa B alpha.	0.847
SMAX5B_008336	SMAX5B_007873	ENSSMAP00000007063	ENSSMAP00000002551	I kappa B alpha isoform 2.	Putative RING-H2 finger protein ATL58-like.	0.406
SMAX5B_008336	SMAX5B_008790	ENSSMAP00000007063	ENSSMAP00000009752	I kappa B alpha isoform 2.	Putative mitogen-activated protein kinase kinase kinase 14-like.	0.633