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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_020856Putative U11/U12 small nuclear ribonucleoprotein 25 kDa protein. (176 aa)    
Predicted Functional Partners:
SMAX5B_013018
Putative U1 small nuclear ribonucleoprotein 70 kDa.
    
 0.912
SMAX5B_005322
Putative U11/U12 small nuclear ribonucleoprotein 48 kDa protein.
     
 0.857
PDCD7
Putative programmed cell death protein 7.
     
 0.796
SMAX5B_010605
Small nuclear ribonucleoprotein F.
   
 0.765
SRRM3
Putative serine/arginine repetitive matrix protein 3.
     
 0.716
ENSSMAP00000019168
Serine/arginine repetitive matrix 2.
     
 0.716
SMAX5B_012230
Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.
   
    0.712
ENSSMAP00000005552
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.709
ENSSMAP00000014281
Small nuclear ribonucleoprotein D1 polypeptide.
     
 0.704
SMAX5B_015189
Small nuclear ribonucleoprotein Sm D3.
   
 
 0.703
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.