SMAX5B_010381 protein (Scophthalmus maximus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMAX5B_010381

Cysteine dioxygenase. (226 aa)

Predicted Functional Partners:

CBS

0.925

SMAX5B_022673

0.923

SMAX5B_014595

0.881

SMAX5B_001633

0.881

SMAX5B_001299

0.881

SMAX5B_012704

0.871

SMAX5B_008726

0.870

SMAX5B_006627

0.864

SMAX5B_018667

0.864

ENSSMAP00000015865

0.860

Your Current Organism:

Scophthalmus maximus

NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBS	ENSSMAP00000015865	ENSSMAP00000022713	ENSSMAP00000015865	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	Glutamate-cysteine ligase, modifier subunit.	0.907
CBS	SMAX5B_010381	ENSSMAP00000022713	ENSSMAP00000008205	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	Cysteine dioxygenase.	0.925
CBS	SMAX5B_012704	ENSSMAP00000022713	ENSSMAP00000001160	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	Aspartate aminotransferase.	0.894
CBS	SMAX5B_022673	ENSSMAP00000022713	ENSSMAP00000004400	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	Putative cystathionine gamma-lyase isoform 2.	0.998
ENSSMAP00000015865	CBS	ENSSMAP00000015865	ENSSMAP00000022713	Glutamate-cysteine ligase, modifier subunit.	Cystathionine beta-synthase; Belongs to the cysteine synthase/cystathionine beta- synthase family.	0.907
ENSSMAP00000015865	SMAX5B_001299	ENSSMAP00000015865	ENSSMAP00000031569	Glutamate-cysteine ligase, modifier subunit.	Putative glutamate decarboxylase 1-like.	0.848
ENSSMAP00000015865	SMAX5B_001633	ENSSMAP00000015865	ENSSMAP00000009831	Glutamate-cysteine ligase, modifier subunit.	Putative glutamate decarboxylase 2.	0.848
ENSSMAP00000015865	SMAX5B_006627	ENSSMAP00000015865	ENSSMAP00000020291	Glutamate-cysteine ligase, modifier subunit.	Putative glutamate decarboxylase 1.	0.828
ENSSMAP00000015865	SMAX5B_008726	ENSSMAP00000015865	ENSSMAP00000021328	Glutamate-cysteine ligase, modifier subunit.	Putative sphingosine-1-phosphate lyase 1.	0.848
ENSSMAP00000015865	SMAX5B_010381	ENSSMAP00000015865	ENSSMAP00000008205	Glutamate-cysteine ligase, modifier subunit.	Cysteine dioxygenase.	0.860
ENSSMAP00000015865	SMAX5B_012704	ENSSMAP00000015865	ENSSMAP00000001160	Glutamate-cysteine ligase, modifier subunit.	Aspartate aminotransferase.	0.864
ENSSMAP00000015865	SMAX5B_014595	ENSSMAP00000015865	ENSSMAP00000007818	Glutamate-cysteine ligase, modifier subunit.	Putative cysteine sulfinic acid decarboxylase.	0.810
ENSSMAP00000015865	SMAX5B_018667	ENSSMAP00000015865	ENSSMAP00000023133	Glutamate-cysteine ligase, modifier subunit.	Glutamate decarboxylase 1.	0.828
ENSSMAP00000015865	SMAX5B_022673	ENSSMAP00000015865	ENSSMAP00000004400	Glutamate-cysteine ligase, modifier subunit.	Putative cystathionine gamma-lyase isoform 2.	0.881
SMAX5B_001299	ENSSMAP00000015865	ENSSMAP00000031569	ENSSMAP00000015865	Putative glutamate decarboxylase 1-like.	Glutamate-cysteine ligase, modifier subunit.	0.848
SMAX5B_001299	SMAX5B_001633	ENSSMAP00000031569	ENSSMAP00000009831	Putative glutamate decarboxylase 1-like.	Putative glutamate decarboxylase 2.	0.845
SMAX5B_001299	SMAX5B_006627	ENSSMAP00000031569	ENSSMAP00000020291	Putative glutamate decarboxylase 1-like.	Putative glutamate decarboxylase 1.	0.821
SMAX5B_001299	SMAX5B_010381	ENSSMAP00000031569	ENSSMAP00000008205	Putative glutamate decarboxylase 1-like.	Cysteine dioxygenase.	0.881
SMAX5B_001299	SMAX5B_012704	ENSSMAP00000031569	ENSSMAP00000001160	Putative glutamate decarboxylase 1-like.	Aspartate aminotransferase.	0.862
SMAX5B_001299	SMAX5B_014595	ENSSMAP00000031569	ENSSMAP00000007818	Putative glutamate decarboxylase 1-like.	Putative cysteine sulfinic acid decarboxylase.	0.806