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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSMAP00000008250UPF1 RNA helicase and ATPase. (1113 aa)    
Predicted Functional Partners:
SMAX5B_001387
Putative serine/threonine-protein kinase SMG1 isoform 2; Belongs to the PI3/PI4-kinase family.
    
 0.992
UPF2
Putative regulator of nonsense transcripts 2.
   
 0.991
SMAX5B_009370
Putative regulator of nonsense transcripts 3B.
    
 0.983
SMAX5B_018325
Putative regulator of nonsense transcripts 3A.
    
 0.981
SMAX5B_020052
Putative rap guanine nucleotide exchange factor-like 1; Belongs to the NDK family.
    
 0.974
SMAX5B_013946
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 0.973
SMAX5B_009161
Uncharacterized protein.
   
 0.947
SMAX5B_020170
RNA-binding protein with serine-rich domain 1.
    
 0.943
SMAX5B_020962
Putative RNA-binding protein with serine-rich domain 1.
    
 0.943
SMAX5B_013888
PINc domain-containing protein.
   
 0.939
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.