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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_001770Putative ATP-binding cassette sub-family D member 3. (659 aa)    
Predicted Functional Partners:
SMAX5B_022127
DNA repair protein RAD51 homolog; Plays an important role in homologous strand exchange, a key step in DNA repair through homologous recombination. Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Catalyzes the recognition of homology and strand exchange between homologous DNA partners to form a joint molecule between a processed DNA break and the repair template. Binds to single-stranded DNA in an ATP-dependent manner to form nucleoprotein filaments which are essential for the homology search and strand exchange. Belongs to the RecA family. RAD51 sub [...]
   
 
 0.969
SMAX5B_006230
Putative peroxisomal biogenesis factor 19.
    
 0.964
SMAX5B_005401
Putative ATP-binding cassette sub-family D member 2.
  
0.921
SMAX5B_015025
Putative ATP-binding cassette sub-family D member 1.
  
0.914
SMAX5B_000209
Putative peroxisomal biogenesis factor 3.
   
 0.906
SMAX5B_019636
Putative ATP-binding cassette sub-family D member 4 isoform 2.
  
  
0.851
SMAX5B_021559
Putative DNA repair protein RAD51-like 4.
   
 
 0.844
SMAX5B_008537
Putative peroxisome biogenesis factor 13.
   
 
 0.839
SMAX5B_021146
Peroxisomal membrane protein PEX16.
     
 0.833
SMAX5B_017901
Putative lysosomal cobalamin transporter-like.
    
 0.823
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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