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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_016371Pcbp2 protein isoform 2. (324 aa)    
Predicted Functional Partners:
SMAX5B_022324
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
    
 0.775
NCBP1
Nuclear cap-binding protein subunit 1.
   
 0.769
SMAX5B_022369
Putative heterogeneous nuclear ribonucleoprotein M-like.
   
 0.730
ENSSMAP00000023988
RNA binding motif protein X-linked.
   
 0.724
SMAX5B_006600
Putative heterogeneous nuclear ribonucleoprotein C-like.
   
 0.709
ENSSMAP00000022261
annotation not available
   
 0.709
SMAX5B_016556
Putative heterogeneous nuclear ribonucleoprotein K-like.
   
0.689
SMAX5B_013018
Putative U1 small nuclear ribonucleoprotein 70 kDa.
   
 0.688
SMAX5B_012645
MGC112305.
   
  0.686
SMAX5B_016995
Putative heterogeneous nuclear ribonucleoprotein D0-like.
   
 0.682
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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