STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_020091Putative UPF0505 protein C16orf62-like isoform 2. (958 aa)    
Predicted Functional Partners:
SMAX5B_000552
Putative coiled-coil domain-containing protein 22.
    
 
 0.931
SMAX5B_008973
Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.
    
 
 0.923
SMAX5B_006902
Putative COMM domain-containing protein 1.
    
 
 0.915
SMAX5B_018182
Putative COMM domain-containing protein 6 isoform 2.
    
 
 0.907
SMAX5B_000957
Putative COMM domain-containing protein 2 isoform 2.
    
 
 0.895
SMAX5B_021661
Putative coiled-coil domain-containing protein 93.
    
 
 0.885
SMAX5B_010079
COMM domain-containing protein.
    
 
 0.867
SMAX5B_004263
Down syndrome critical region protein 3-like.
   
 
 0.795
SMAX5B_008804
UDENN domain-containing protein.
    
 
 0.777
COMMD10
Putative COMM domain-containing protein 10.
    
 
 0.745
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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