STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSMAP00000010429Cone-rod homeobox. (295 aa)    
Predicted Functional Partners:
SMAX5B_008636
Putative double homeobox protein 4C-like.
    
0.606
NR2E3
Putative photoreceptor-specific nuclear receptor.
   
 
 0.561
SMAX5B_009852
Putative photoreceptor-specific nuclear receptor.
   
 
 0.561
SMAX5B_016315
Thyroid hormone receptor beta 2.
   
 
 0.534
SMAX5B_017598
Putative GTP-binding protein REM 2-like.
    
 
 0.530
SMAX5B_014690
Putative nuclear receptor subfamily 1 group D member 1-like.
    
 
 0.528
SMAX5B_014254
Retinoic acid receptor gamma variant a.
    
 
 0.497
RARG
Retinoic acid receptor gamma-A.
    
 
 0.497
Aanat2
Acetyl transferase.
      
 0.487
SMAX5B_018646
Neurogenic differentiation factor.
   
  
 0.486
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.