STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_008591RAB5C member RAS oncogene family. (220 aa)    
Predicted Functional Partners:
SMAX5B_021633
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.959
SMAX5B_009931
Putative early endosome antigen 1.
    
 0.957
SMAX5B_004261
Putative rab5 GDP/GTP exchange factor.
   
 0.957
SMAX5B_013500
Putative rab5 GDP/GTP exchange factor-like.
   
 0.957
SMAX5B_016549
Putative rab5 GDP/GTP exchange factor-like.
   
 0.957
SMAX5B_014898
Uncharacterized protein.
   
 0.919
SMAX5B_001081
Uncharacterized protein.
    
 
 0.885
SMAX5B_021272
Putative DCC-interacting protein 13-beta.
    
 
 0.885
SMAX5B_021493
Putative rab GTPase-binding effector protein 1 isoform 2.
    
 0.879
SMAX5B_010936
Putative GTPase-activating protein and VPS9 domain-containing protein 1-like.
    
 0.854
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.