SMAX5B_011214 protein (Scophthalmus maximus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMAX5B_011214

DnaJ-like subfamily C member 7. (493 aa)

Predicted Functional Partners:

SMAX5B_019388

0.873

SMAX5B_008824

0.873

SMAX5B_000356

0.816

SMAX5B_018287

0.801

SMAX5B_015325

0.796

SMAX5B_003769

0.791

SMAX5B_009951

0.784

SMAX5B_013602

0.783

SMAX5B_012092

0.780

SMAX5B_004867

0.780

Your Current Organism:

Scophthalmus maximus

NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMAX5B_000356	SMAX5B_003769	ENSSMAP00000004144	ENSSMAP00000010402	Putative heat shock 70 kDa protein 4L.	Putative dnaJ-like subfamily C member 3-like.	0.768
SMAX5B_000356	SMAX5B_004867	ENSSMAP00000004144	ENSSMAP00000006898	Putative heat shock 70 kDa protein 4L.	Heat shock cognate 70 kDa.	0.868
SMAX5B_000356	SMAX5B_008824	ENSSMAP00000004144	ENSSMAP00000007913	Putative heat shock 70 kDa protein 4L.	Heat shock 70kDa protein 1a.	0.517
SMAX5B_000356	SMAX5B_009951	ENSSMAP00000004144	ENSSMAP00000016029	Putative heat shock 70 kDa protein 4L.	94 kD glucose-regulated protein.	0.851
SMAX5B_000356	SMAX5B_011214	ENSSMAP00000004144	ENSSMAP00000012240	Putative heat shock 70 kDa protein 4L.	DnaJ-like subfamily C member 7.	0.816
SMAX5B_000356	SMAX5B_012092	ENSSMAP00000004144	ENSSMAP00000001321	Putative heat shock 70 kDa protein 4L.	Heat shock protein 70; Belongs to the heat shock protein 70 family.	0.874
SMAX5B_000356	SMAX5B_013602	ENSSMAP00000004144	ENSSMAP00000022256	Putative heat shock 70 kDa protein 4L.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.945
SMAX5B_000356	SMAX5B_015325	ENSSMAP00000004144	ENSSMAP00000025162	Putative heat shock 70 kDa protein 4L.	Stress-70 protein mitochondrial; Belongs to the heat shock protein 70 family.	0.921
SMAX5B_000356	SMAX5B_018287	ENSSMAP00000004144	ENSSMAP00000026945	Putative heat shock 70 kDa protein 4L.	Putative dnaJ-like subfamily C member 3.	0.773
SMAX5B_000356	SMAX5B_019388	ENSSMAP00000004144	ENSSMAP00000007598	Putative heat shock 70 kDa protein 4L.	Putative heat shock protein 105 kDa.	0.517
SMAX5B_003769	SMAX5B_000356	ENSSMAP00000010402	ENSSMAP00000004144	Putative dnaJ-like subfamily C member 3-like.	Putative heat shock 70 kDa protein 4L.	0.768
SMAX5B_003769	SMAX5B_004867	ENSSMAP00000010402	ENSSMAP00000006898	Putative dnaJ-like subfamily C member 3-like.	Heat shock cognate 70 kDa.	0.757
SMAX5B_003769	SMAX5B_008824	ENSSMAP00000010402	ENSSMAP00000007913	Putative dnaJ-like subfamily C member 3-like.	Heat shock 70kDa protein 1a.	0.768
SMAX5B_003769	SMAX5B_009951	ENSSMAP00000010402	ENSSMAP00000016029	Putative dnaJ-like subfamily C member 3-like.	94 kD glucose-regulated protein.	0.928
SMAX5B_003769	SMAX5B_011214	ENSSMAP00000010402	ENSSMAP00000012240	Putative dnaJ-like subfamily C member 3-like.	DnaJ-like subfamily C member 7.	0.791
SMAX5B_003769	SMAX5B_012092	ENSSMAP00000010402	ENSSMAP00000001321	Putative dnaJ-like subfamily C member 3-like.	Heat shock protein 70; Belongs to the heat shock protein 70 family.	0.757
SMAX5B_003769	SMAX5B_013602	ENSSMAP00000010402	ENSSMAP00000022256	Putative dnaJ-like subfamily C member 3-like.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.761
SMAX5B_003769	SMAX5B_015325	ENSSMAP00000010402	ENSSMAP00000025162	Putative dnaJ-like subfamily C member 3-like.	Stress-70 protein mitochondrial; Belongs to the heat shock protein 70 family.	0.838
SMAX5B_003769	SMAX5B_018287	ENSSMAP00000010402	ENSSMAP00000026945	Putative dnaJ-like subfamily C member 3-like.	Putative dnaJ-like subfamily C member 3.	0.845
SMAX5B_003769	SMAX5B_019388	ENSSMAP00000010402	ENSSMAP00000007598	Putative dnaJ-like subfamily C member 3-like.	Putative heat shock protein 105 kDa.	0.768