STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_000156Putative CCAAT/enhancer-binding protein zeta-like. (1095 aa)    
Predicted Functional Partners:
SMAX5B_014880
Putative nucleolar complex protein 2-like.
   
 
 0.998
SMAX5B_001798
Uncharacterized protein.
   
 
 0.997
SMAX5B_006998
Putative ATP-dependent RNA helicase DDX56 isoform 2.
   
 
 0.993
SMAX5B_021692
RNA helicase.
   
 
 0.990
PES1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 
 0.990
SMAX5B_001315
Brix domain-containing protein 1 isoform 2.
   
 
 0.990
SMAX5B_019505
Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.
   
 
 0.989
SMAX5B_018012
Putative RRP12-like protein.
   
 
 0.986
SMAX5B_021191
Putative RNA-binding protein 34.
   
 
 0.986
SMAX5B_021659
Putative MKI67 FHA domain-interacting nucleolar phosphoprotein.
   
 
 0.982
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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