STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_011528Putative WD40 repeat-containing protein SMU1. (495 aa)    
Predicted Functional Partners:
SMAX5B_021510
Uncharacterized protein.
   
 0.981
SMAX5B_005336
Microfibrillar-associated protein 1.
   
 0.967
SMAX5B_012239
Zmat2-prov protein.
    
 0.930
SMAX5B_009217
Pre-mRNA-splicing factor 38A.
   
 0.926
SMAX5B_014845
Putative pre-mRNA-processing factor 6.
    
 0.915
SMAX5B_006828
Putative WW domain-binding protein 4.
    
 0.893
UBL5
Ubiquitin like 5.
    
 0.887
ENSSMAP00000033882
Thioredoxin-like 4A.
    
  0.877
SMAX5B_013355
Putative pre-mRNA-processing-splicing factor 8.
    
 
 0.863
SMAX5B_011043
U5 small nuclear ribonucleoprotein 200 kDa helicase.
   
 
 0.859
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.