STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_009099Putative vam6/Vps39-like protein. (888 aa)    
Predicted Functional Partners:
SMAX5B_002124
Vacuolar protein sorting-associated protein 16 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS16 family.
   
 0.999
SMAX5B_004818
Vacuolar protein sorting-associated protein 11 homolog; Plays a role in vesicle-mediated protein trafficking to lysosomal compartments including the endocytic membrane transport and autophagic pathways. Believed to act as a core component of the putative HOPS and CORVET endosomal tethering complexes. Belongs to the VPS11 family.
   
 0.999
SMAX5B_008226
Vacuolar protein sorting-associated protein 18.
   
 0.999
ENSSMAP00000029433
VPS41 subunit of HOPS complex.
   
 0.999
SMAX5B_010820
Vacuolar protein sorting-associated protein 33A-like protein isoform 2; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.997
SMAX5B_005347
Putative vacuolar protein sorting-associated protein 33B; Belongs to the STXBP/unc-18/SEC1 family.
   
 0.992
ENSSMAP00000000975
Vesicle-associated membrane protein 8 (endobrevin).
    
 
 0.985
SMAX5B_020246
Vacuolar fusion protein CCZ1-like.
    
 
 0.985
SMAX5B_012046
Putative syntaxin-17; Belongs to the syntaxin family.
   
 
 0.983
SMAX5B_010458
Putative synaptobrevin-like YKT6 isoform 4; Belongs to the synaptobrevin family.
    
 
 0.982
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.