STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_000907Putative double-stranded RNA-specific editase 1. (685 aa)    
Predicted Functional Partners:
SMAX5B_005752
Putative SUMO-conjugating enzyme UBC9 isoform 3; Belongs to the ubiquitin-conjugating enzyme family.
    
   0.536
SMAX5B_020527
BTB/POZ domain-containing protein KCTD2.
    
   0.536
ENSSMAP00000020441
Ubiquitin-conjugating enzyme E2Ia.
    
   0.536
TARBP2
RISC-loading complex subunit TARBP2; Required for formation of the RNA induced silencing complex (RISC). Component of the RISC loading complex (RLC), also known as the micro-RNA (miRNA) loading complex (miRLC), which is composed of DICER1, AGO2 and TARBP2. Within the RLC/miRLC, DICER1 and TARBP2 are required to process precursor miRNAs (pre-miRNAs) to mature miRNAs and then load them onto AGO2. AGO2 bound to the mature miRNA constitutes the minimal RISC and may subsequently dissociate from DICER1 and TARBP2. May also play a role in the production of short interfering RNAs (siRNAs) from [...]
    
0.465
SMAX5B_018492
Putative interferon-inducible double-stranded RNA-dependent protein kinase activator A isoform 2.
    
 0.465
SMAX5B_001220
Putative ribonuclease 3.
    
 0.452
SMAX5B_007646
Endoribonuclease dicer-like protein; Belongs to the helicase family. Dicer subfamily.
    
 0.448
SMAX5B_000094
Putative tRNA-specific adenosine deaminase 2.
      
 0.435
ENSSMAP00000018200
Zinc finger, NFX1-type containing 1.
   
  
 0.421
SMAX5B_007124
Putative inactive tRNA-specific adenosine deaminase-like protein 3.
      
 0.418
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.