SMAX5B_017023 protein (Scophthalmus maximus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMAX5B_017023

Putative placenta-specific 8 protein isoform 3. (104 aa)

Predicted Functional Partners:

SMAX5B_009951

0.686

RPL9

0.661

SMAX5B_017386

0.661

SMAX5B_018630

0.617

ENSSMAP00000021786

0.617

MED17

0.613

SMAX5B_008879

0.606

SMAX5B_018077

0.606

SMAX5B_001922

0.606

ENSSMAP00000018886

0.606

Your Current Organism:

Scophthalmus maximus

NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSMAP00000018886	MED17	ENSSMAP00000018886	ENSSMAP00000031097	Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.	Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.451
ENSSMAP00000018886	SMAX5B_017023	ENSSMAP00000018886	ENSSMAP00000016225	Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.	Putative placenta-specific 8 protein isoform 3.	0.606
ENSSMAP00000018886	SMAX5B_017386	ENSSMAP00000018886	ENSSMAP00000032894	Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.	Putative mediator of RNA polymerase II transcription subunit 1.	0.559
ENSSMAP00000018886	SMAX5B_018630	ENSSMAP00000018886	ENSSMAP00000006837	Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.444
ENSSMAP00000021786	MED17	ENSSMAP00000021786	ENSSMAP00000031097	annotation not available	Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.990
ENSSMAP00000021786	RPL9	ENSSMAP00000021786	ENSSMAP00000017406	annotation not available	Putative 60S ribosomal protein L9-like.	0.948
ENSSMAP00000021786	SMAX5B_017023	ENSSMAP00000021786	ENSSMAP00000016225	annotation not available	Putative placenta-specific 8 protein isoform 3.	0.617
ENSSMAP00000021786	SMAX5B_017386	ENSSMAP00000021786	ENSSMAP00000032894	annotation not available	Putative mediator of RNA polymerase II transcription subunit 1.	0.948
MED17	ENSSMAP00000018886	ENSSMAP00000031097	ENSSMAP00000018886	Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Peroxisome proliferator-activated receptor gamma, coactivator 1 alpha.	0.451
MED17	ENSSMAP00000021786	ENSSMAP00000031097	ENSSMAP00000021786	Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	annotation not available	0.990
MED17	RPL9	ENSSMAP00000031097	ENSSMAP00000017406	Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Putative 60S ribosomal protein L9-like.	0.980
MED17	SMAX5B_017023	ENSSMAP00000031097	ENSSMAP00000016225	Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Putative placenta-specific 8 protein isoform 3.	0.613
MED17	SMAX5B_017386	ENSSMAP00000031097	ENSSMAP00000032894	Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Putative mediator of RNA polymerase II transcription subunit 1.	0.999
MED17	SMAX5B_018630	ENSSMAP00000031097	ENSSMAP00000006837	Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.998
RPL9	ENSSMAP00000021786	ENSSMAP00000017406	ENSSMAP00000021786	Putative 60S ribosomal protein L9-like.	annotation not available	0.948
RPL9	MED17	ENSSMAP00000017406	ENSSMAP00000031097	Putative 60S ribosomal protein L9-like.	Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.980
RPL9	SMAX5B_017023	ENSSMAP00000017406	ENSSMAP00000016225	Putative 60S ribosomal protein L9-like.	Putative placenta-specific 8 protein isoform 3.	0.661
RPL9	SMAX5B_018630	ENSSMAP00000017406	ENSSMAP00000006837	Putative 60S ribosomal protein L9-like.	Mediator of RNA polymerase II transcription subunit 14; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	0.948
SMAX5B_001922	SMAX5B_017023	ENSSMAP00000009607	ENSSMAP00000016225	Putative peroxisome proliferator-activated receptor gamma coactivator-related protein 1-like.	Putative placenta-specific 8 protein isoform 3.	0.606
SMAX5B_008879	SMAX5B_017023	ENSSMAP00000004702	ENSSMAP00000016225	Pre-mRNA-splicing factor RBM22.	Putative placenta-specific 8 protein isoform 3.	0.606