STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSMAP00000016528RAB22A, member RAS oncogene family. (194 aa)    
Predicted Functional Partners:
SMAX5B_004261
Putative rab5 GDP/GTP exchange factor.
   
 0.957
SMAX5B_013500
Putative rab5 GDP/GTP exchange factor-like.
   
 0.957
SMAX5B_016549
Putative rab5 GDP/GTP exchange factor-like.
   
 0.957
SMAX5B_014898
Uncharacterized protein.
   
 0.902
SMAX5B_017571
Putative geranylgeranyl transferase type-2 subunit alpha isoform 2.
    
 0.892
SMAX5B_001081
Uncharacterized protein.
    
 
 0.885
SMAX5B_021272
Putative DCC-interacting protein 13-beta.
    
 
 0.885
SMAX5B_016005
Putative alsin.
    
 0.852
SMAX5B_002261
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.847
SMAX5B_000872
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.847
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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