STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WIPI1Putative WD repeat domain phosphoinositide-interacting protein 1. (455 aa)    
Predicted Functional Partners:
SMAX5B_017170
Putative autophagy-related protein 16-2.
   
 0.983
ATG2B
Putative autophagy-related protein 2-like B.
    
 0.963
SMAX5B_009280
Putative autophagy-related protein 2-like A-like.
    
 0.963
ENSSMAP00000027300
ATG5 autophagy related 5 homolog (S. cerevisiae).
    
 0.935
SMAX5B_011920
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
    
 0.931
ENSSMAP00000029493
ATG9 autophagy related 9 homolog A (S. cerevisiae).
   
 0.897
SMAX5B_006652
Autophagy-related protein 9; Involved in autophagy and cytoplasm to vacuole transport (Cvt) vesicle formation. Plays a key role in the organization of the preautophagosomal structure/phagophore assembly site (PAS), the nucleating site for formation of the sequestering vesicle. Belongs to the ATG9 family.
   
 0.897
SMAX5B_000910
Autophagy-related protein 3.
    
 0.863
ENSSMAP00000023213
ATG7 autophagy related 7 homolog (S. cerevisiae).
    
 0.863
SMAX5B_017287
Beclin-1.
    
 0.860
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.