SMAX5B_010269 protein (Scophthalmus maximus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMAX5B_010269

Putative coagulation factor V; Belongs to the multicopper oxidase family. (2062 aa)

Predicted Functional Partners:

SMAX5B_002120

0.965

SMAX5B_012687

0.887

SMAX5B_003025

0.773

SMAX5B_021652

0.767

SMAX5B_013909

0.764

SMAX5B_005709

0.760

SMAX5B_008797

0.751

SMAX5B_009755

0.740

SMAX5B_009760

0.740

SMAX5B_006790

0.740

Your Current Organism:

Scophthalmus maximus

NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMAX5B_002120	SMAX5B_006790	ENSSMAP00000000080	ENSSMAP00000004630	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Putative coagulation factor IX-like.	0.883
SMAX5B_002120	SMAX5B_009755	ENSSMAP00000000080	ENSSMAP00000003737	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Putative von Willebrand factor isoform 2.	0.669
SMAX5B_002120	SMAX5B_009760	ENSSMAP00000000080	ENSSMAP00000004068	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Putative otogelin-like protein isoform 2.	0.669
SMAX5B_002120	SMAX5B_010269	ENSSMAP00000000080	ENSSMAP00000018173	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Putative coagulation factor V; Belongs to the multicopper oxidase family.	0.965
SMAX5B_002120	SMAX5B_012687	ENSSMAP00000000080	ENSSMAP00000034877	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	Putative vitamin K-dependent protein S.	0.410
SMAX5B_003025	SMAX5B_005709	ENSSMAP00000020261	ENSSMAP00000028250	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.	Putative frataxin mitochondrial isoform 2.	0.980
SMAX5B_003025	SMAX5B_010269	ENSSMAP00000020261	ENSSMAP00000018173	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.	Putative coagulation factor V; Belongs to the multicopper oxidase family.	0.773
SMAX5B_005709	SMAX5B_003025	ENSSMAP00000028250	ENSSMAP00000020261	Putative frataxin mitochondrial isoform 2.	Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.	0.980
SMAX5B_005709	SMAX5B_010269	ENSSMAP00000028250	ENSSMAP00000018173	Putative frataxin mitochondrial isoform 2.	Putative coagulation factor V; Belongs to the multicopper oxidase family.	0.760
SMAX5B_006790	SMAX5B_002120	ENSSMAP00000004630	ENSSMAP00000000080	Putative coagulation factor IX-like.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.883
SMAX5B_006790	SMAX5B_009755	ENSSMAP00000004630	ENSSMAP00000003737	Putative coagulation factor IX-like.	Putative von Willebrand factor isoform 2.	0.500
SMAX5B_006790	SMAX5B_009760	ENSSMAP00000004630	ENSSMAP00000004068	Putative coagulation factor IX-like.	Putative otogelin-like protein isoform 2.	0.500
SMAX5B_006790	SMAX5B_010269	ENSSMAP00000004630	ENSSMAP00000018173	Putative coagulation factor IX-like.	Putative coagulation factor V; Belongs to the multicopper oxidase family.	0.740
SMAX5B_008797	SMAX5B_010269	ENSSMAP00000024925	ENSSMAP00000018173	Putative multiple coagulation factor deficiency protein 2.	Putative coagulation factor V; Belongs to the multicopper oxidase family.	0.751
SMAX5B_008797	SMAX5B_013909	ENSSMAP00000024925	ENSSMAP00000010330	Putative multiple coagulation factor deficiency protein 2.	L-type lectin-like domain-containing protein.	0.998
SMAX5B_009755	SMAX5B_002120	ENSSMAP00000003737	ENSSMAP00000000080	Putative von Willebrand factor isoform 2.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.669
SMAX5B_009755	SMAX5B_006790	ENSSMAP00000003737	ENSSMAP00000004630	Putative von Willebrand factor isoform 2.	Putative coagulation factor IX-like.	0.500
SMAX5B_009755	SMAX5B_010269	ENSSMAP00000003737	ENSSMAP00000018173	Putative von Willebrand factor isoform 2.	Putative coagulation factor V; Belongs to the multicopper oxidase family.	0.740
SMAX5B_009760	SMAX5B_002120	ENSSMAP00000004068	ENSSMAP00000000080	Putative otogelin-like protein isoform 2.	Prothrombin; Thrombin, which cleaves bonds after Arg and Lys, converts fibrinogen to fibrin and activates factors V, VII, VIII, XIII, and, in complex with thrombomodulin, protein C. Functions in blood homeostasis, inflammation and wound healing; Belongs to the peptidase S1 family.	0.669
SMAX5B_009760	SMAX5B_006790	ENSSMAP00000004068	ENSSMAP00000004630	Putative otogelin-like protein isoform 2.	Putative coagulation factor IX-like.	0.500