STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_002957Putative m7GpppN-mRNA hydrolase isoform 3. (398 aa)    
Predicted Functional Partners:
SMAX5B_015363
Putative enhancer of mRNA-decapping protein 4.
    
 0.999
SMAX5B_021731
5'-3' exoribonuclease 1.
   
 0.998
SMAX5B_003253
Putative mRNA-decapping enzyme 1A.
    
 0.989
SMAX5B_007738
mRNA_decap_C domain-containing protein.
    
 0.982
SMAX5B_001743
PAT1 domain-containing protein.
    
 0.980
SMAX5B_020253
PAT1 domain-containing protein.
    
 0.980
LSM1
U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.
    
 0.974
SMAX5B_013088
Putative enhancer of mRNA-decapping protein 3 isoform 2.
  
 0.969
SMAX5B_009806
Putative enhancer of mRNA-decapping protein 3.
  
 0.969
SMAX5B_022662
Putative yjeF N-terminal domain-containing protein 3-like.
  
 0.961
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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