SMAX5B_020537 protein (Scophthalmus maximus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMAX5B_020537

Putative inward rectifier potassium channel 16-like. (457 aa)

Predicted Functional Partners:

KCNJ15

0.792

SMAX5B_010596

0.785

KCNJ10

0.783

SMAX5B_005801

0.729

GNB5

0.714

SMAX5B_009833

0.714

SMAX5B_006060

0.703

SMAX5B_013962

0.702

SMAX5B_020566

0.701

ENSSMAP00000019209

0.692

Your Current Organism:

Scophthalmus maximus

NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSMAP00000019209	GNB5	ENSSMAP00000019209	ENSSMAP00000012571	Guanine nucleotide binding protein (G protein), gamma 8.	Putative guanine nucleotide-binding protein subunit beta-5-like isoform 2.	0.851
ENSSMAP00000019209	KCNJ10	ENSSMAP00000019209	ENSSMAP00000015593	Guanine nucleotide binding protein (G protein), gamma 8.	Putative ATP-sensitive inward rectifier potassium channel 10-like.	0.659
ENSSMAP00000019209	KCNJ15	ENSSMAP00000019209	ENSSMAP00000012830	Guanine nucleotide binding protein (G protein), gamma 8.	Putative ATP-sensitive inward rectifier potassium channel 15.	0.659
ENSSMAP00000019209	SMAX5B_005801	ENSSMAP00000019209	ENSSMAP00000002548	Guanine nucleotide binding protein (G protein), gamma 8.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.689
ENSSMAP00000019209	SMAX5B_009833	ENSSMAP00000019209	ENSSMAP00000019904	Guanine nucleotide binding protein (G protein), gamma 8.	GNB5 FLJ37457 FLJ43714 GB5.	0.851
ENSSMAP00000019209	SMAX5B_010596	ENSSMAP00000019209	ENSSMAP00000006400	Guanine nucleotide binding protein (G protein), gamma 8.	Putative ATP-sensitive inward rectifier potassium channel 10-like.	0.659
ENSSMAP00000019209	SMAX5B_020537	ENSSMAP00000019209	ENSSMAP00000018567	Guanine nucleotide binding protein (G protein), gamma 8.	Putative inward rectifier potassium channel 16-like.	0.692
ENSSMAP00000019209	SMAX5B_020566	ENSSMAP00000019209	ENSSMAP00000013210	Guanine nucleotide binding protein (G protein), gamma 8.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.666
GNB5	ENSSMAP00000019209	ENSSMAP00000012571	ENSSMAP00000019209	Putative guanine nucleotide-binding protein subunit beta-5-like isoform 2.	Guanine nucleotide binding protein (G protein), gamma 8.	0.851
GNB5	KCNJ10	ENSSMAP00000012571	ENSSMAP00000015593	Putative guanine nucleotide-binding protein subunit beta-5-like isoform 2.	Putative ATP-sensitive inward rectifier potassium channel 10-like.	0.675
GNB5	KCNJ15	ENSSMAP00000012571	ENSSMAP00000012830	Putative guanine nucleotide-binding protein subunit beta-5-like isoform 2.	Putative ATP-sensitive inward rectifier potassium channel 15.	0.675
GNB5	SMAX5B_005801	ENSSMAP00000012571	ENSSMAP00000002548	Putative guanine nucleotide-binding protein subunit beta-5-like isoform 2.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.877
GNB5	SMAX5B_006060	ENSSMAP00000012571	ENSSMAP00000029014	Putative guanine nucleotide-binding protein subunit beta-5-like isoform 2.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.964
GNB5	SMAX5B_010596	ENSSMAP00000012571	ENSSMAP00000006400	Putative guanine nucleotide-binding protein subunit beta-5-like isoform 2.	Putative ATP-sensitive inward rectifier potassium channel 10-like.	0.675
GNB5	SMAX5B_013962	ENSSMAP00000012571	ENSSMAP00000012167	Putative guanine nucleotide-binding protein subunit beta-5-like isoform 2.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.924
GNB5	SMAX5B_020537	ENSSMAP00000012571	ENSSMAP00000018567	Putative guanine nucleotide-binding protein subunit beta-5-like isoform 2.	Putative inward rectifier potassium channel 16-like.	0.714
GNB5	SMAX5B_020566	ENSSMAP00000012571	ENSSMAP00000013210	Putative guanine nucleotide-binding protein subunit beta-5-like isoform 2.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.870
KCNJ10	ENSSMAP00000019209	ENSSMAP00000015593	ENSSMAP00000019209	Putative ATP-sensitive inward rectifier potassium channel 10-like.	Guanine nucleotide binding protein (G protein), gamma 8.	0.659
KCNJ10	GNB5	ENSSMAP00000015593	ENSSMAP00000012571	Putative ATP-sensitive inward rectifier potassium channel 10-like.	Putative guanine nucleotide-binding protein subunit beta-5-like isoform 2.	0.675
KCNJ10	SMAX5B_005801	ENSSMAP00000015593	ENSSMAP00000002548	Putative ATP-sensitive inward rectifier potassium channel 10-like.	Guanine nucleotide-binding protein subunit gamma; Guanine nucleotide-binding proteins (G proteins) are involved as a modulator or transducer in various transmembrane signaling systems. The beta and gamma chains are required for the GTPase activity, for replacement of GDP by GTP, and for G protein-effector interaction.	0.692