STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_020100U6 snRNA-specific terminal uridylyltransferase 1. (798 aa)    
Predicted Functional Partners:
SMAX5B_006882
Putative U4/U6 small nuclear ribonucleoprotein Prp4.
   
   0.831
SMAX5B_020425
Putative WD repeat-containing protein 24-like.
   
    0.824
SMAX5B_009348
Putative integrator complex subunit 5.
   
    0.784
SMAX5B_016489
Putative squamous cell carcinoma antigen recognized by T-cells 3.
   
 
 0.762
SMAX5B_011843
U4/U6 small nuclear ribonucleoprotein Prp31.
    
 
 0.722
SMAX5B_010331
Putative coiled-coil domain-containing protein 84.
    
   0.718
dis3l2
DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of both mRNAs and miRNAs that have been polyuridylated by a terminal uridylyltransferase. Essential for correct mitosis, and negatively regulates cell proliferation. Belongs to the RNR ribonuclease family. DIS3L2 subfamily.
    
 
 0.705
SMAX5B_011963
Putative U4/U6 small nuclear ribonucleoprotein Prp3 isoform 2.
    
   0.687
SMAX5B_019695
CSD domain-containing protein.
   
 0.635
SMAX5B_016645
Putative la-related protein 7 isoform 3.
    
 0.618
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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