STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSMAP00000018790RIO kinase 3 (yeast). (509 aa)    
Predicted Functional Partners:
SMAX5B_004727
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
   
 0.999
SMAX5B_000064
40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family.
    
  0.996
SMAX5B_011302
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
  
  0.995
ENSSMAP00000034134
LTV1 ribosome biogenesis factor.
   
 0.984
SMAX5B_008251
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
    
  0.980
SMAX5B_000679
40S ribosomal protein S3 isoform 2; Belongs to the universal ribosomal protein uS3 family.
   
 0.972
ENSSMAP00000016056
Eukaryotic translation initiation factor 1A X-linked b.
  
 
 0.960
RPS3A
40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.
   
 0.956
SMAX5B_005763
Putative 40S ribosomal protein S15-like isoform 3; Belongs to the universal ribosomal protein uS19 family.
    
 0.954
SMAX5B_017122
Putative pre-rRNA-processing protein TSR1-like.
   
 0.949
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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