SMAX5B_015803 protein (Scophthalmus maximus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMAX5B_015803

Putative src-like-adapter. (290 aa)

Predicted Functional Partners:

SMAX5B_007298

0.881

ENSSMAP00000000050

0.803

SMAX5B_002710

0.785

SMAX5B_009952

0.780

SMAX5B_012067

0.740

SMAX5B_007873

0.732

SMAX5B_017989

0.719

SMAX5B_008528

0.714

SMAX5B_012648

0.712

SMAX5B_022439

0.707

Your Current Organism:

Scophthalmus maximus

NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSMAP00000000050	SMAX5B_007298	ENSSMAP00000000050	ENSSMAP00000025053	annotation not available	Uncharacterized protein.	0.492
ENSSMAP00000000050	SMAX5B_007873	ENSSMAP00000000050	ENSSMAP00000002551	annotation not available	Putative RING-H2 finger protein ATL58-like.	0.532
ENSSMAP00000000050	SMAX5B_012067	ENSSMAP00000000050	ENSSMAP00000018488	annotation not available	Protein-tyrosine-phosphatase isoform 3.	0.855
ENSSMAP00000000050	SMAX5B_015803	ENSSMAP00000000050	ENSSMAP00000019905	annotation not available	Putative src-like-adapter.	0.803
SMAX5B_002710	SMAX5B_007298	ENSSMAP00000013787	ENSSMAP00000025053	Putative E3 ubiquitin-protein ligase MIB2.	Uncharacterized protein.	0.516
SMAX5B_002710	SMAX5B_007873	ENSSMAP00000013787	ENSSMAP00000002551	Putative E3 ubiquitin-protein ligase MIB2.	Putative RING-H2 finger protein ATL58-like.	0.889
SMAX5B_002710	SMAX5B_008528	ENSSMAP00000013787	ENSSMAP00000027984	Putative E3 ubiquitin-protein ligase MIB2.	Putative baculoviral IAP repeat-containing protein 6-like.	0.805
SMAX5B_002710	SMAX5B_009952	ENSSMAP00000013787	ENSSMAP00000014881	Putative E3 ubiquitin-protein ligase MIB2.	Putative ubiquitin-conjugating enzyme E2 variant 3.	0.611
SMAX5B_002710	SMAX5B_012648	ENSSMAP00000013787	ENSSMAP00000001048	Putative E3 ubiquitin-protein ligase MIB2.	Putative tumor necrosis factor receptor type 1-associated DEATH domain protein isoform 2.	0.980
SMAX5B_002710	SMAX5B_015803	ENSSMAP00000013787	ENSSMAP00000019905	Putative E3 ubiquitin-protein ligase MIB2.	Putative src-like-adapter.	0.785
SMAX5B_007298	ENSSMAP00000000050	ENSSMAP00000025053	ENSSMAP00000000050	Uncharacterized protein.	annotation not available	0.492
SMAX5B_007298	SMAX5B_002710	ENSSMAP00000025053	ENSSMAP00000013787	Uncharacterized protein.	Putative E3 ubiquitin-protein ligase MIB2.	0.516
SMAX5B_007298	SMAX5B_007873	ENSSMAP00000025053	ENSSMAP00000002551	Uncharacterized protein.	Putative RING-H2 finger protein ATL58-like.	0.862
SMAX5B_007298	SMAX5B_012067	ENSSMAP00000025053	ENSSMAP00000018488	Uncharacterized protein.	Protein-tyrosine-phosphatase isoform 3.	0.629
SMAX5B_007298	SMAX5B_015803	ENSSMAP00000025053	ENSSMAP00000019905	Uncharacterized protein.	Putative src-like-adapter.	0.881
SMAX5B_007873	ENSSMAP00000000050	ENSSMAP00000002551	ENSSMAP00000000050	Putative RING-H2 finger protein ATL58-like.	annotation not available	0.532
SMAX5B_007873	SMAX5B_002710	ENSSMAP00000002551	ENSSMAP00000013787	Putative RING-H2 finger protein ATL58-like.	Putative E3 ubiquitin-protein ligase MIB2.	0.889
SMAX5B_007873	SMAX5B_007298	ENSSMAP00000002551	ENSSMAP00000025053	Putative RING-H2 finger protein ATL58-like.	Uncharacterized protein.	0.862
SMAX5B_007873	SMAX5B_008528	ENSSMAP00000002551	ENSSMAP00000027984	Putative RING-H2 finger protein ATL58-like.	Putative baculoviral IAP repeat-containing protein 6-like.	0.979
SMAX5B_007873	SMAX5B_009952	ENSSMAP00000002551	ENSSMAP00000014881	Putative RING-H2 finger protein ATL58-like.	Putative ubiquitin-conjugating enzyme E2 variant 3.	0.491