SMAX5B_012282 protein (Scophthalmus maximus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMAX5B_012282

Putative ragulator complex protein LAMTOR4. (100 aa)

Predicted Functional Partners:

SMAX5B_013556

0.999

SMAX5B_014866

0.999

SMAX5B_013451

0.999

SMAX5B_001923

0.996

SMAX5B_004116

0.985

SMAX5B_015875

0.978

SMAX5B_002549

0.978

SMAX5B_016923

0.942

SMAX5B_002253

0.937

SMAX5B_011722

0.925

Your Current Organism:

Scophthalmus maximus

NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMAX5B_001923	SMAX5B_002253	ENSSMAP00000018640	ENSSMAP00000026213	Putative regulatory-associated protein of mTOR.	Putative nitrogen permease regulator 2-like protein-like isoform 4.	0.854
SMAX5B_001923	SMAX5B_002549	ENSSMAP00000018640	ENSSMAP00000005398	Putative regulatory-associated protein of mTOR.	Ras-related GTP binding C.	0.988
SMAX5B_001923	SMAX5B_004116	ENSSMAP00000018640	ENSSMAP00000029064	Putative regulatory-associated protein of mTOR.	Ras-related GTP binding A isoform 2.	0.996
SMAX5B_001923	SMAX5B_012282	ENSSMAP00000018640	ENSSMAP00000021971	Putative regulatory-associated protein of mTOR.	Putative ragulator complex protein LAMTOR4.	0.996
SMAX5B_001923	SMAX5B_013451	ENSSMAP00000018640	ENSSMAP00000031894	Putative regulatory-associated protein of mTOR.	Putative ragulator complex protein LAMTOR1-like.	0.996
SMAX5B_001923	SMAX5B_013556	ENSSMAP00000018640	ENSSMAP00000026448	Putative regulatory-associated protein of mTOR.	Ragulator complex protein LAMTOR2.	0.982
SMAX5B_001923	SMAX5B_014866	ENSSMAP00000018640	ENSSMAP00000031182	Putative regulatory-associated protein of mTOR.	Putative ragulator complex protein LAMTOR5.	0.996
SMAX5B_001923	SMAX5B_015875	ENSSMAP00000018640	ENSSMAP00000001793	Putative regulatory-associated protein of mTOR.	Putative ras-related GTP-binding protein C-like.	0.988
SMAX5B_001923	SMAX5B_016923	ENSSMAP00000018640	ENSSMAP00000021399	Putative regulatory-associated protein of mTOR.	Putative ragulator complex protein LAMTOR3 isoform 2.	0.996
SMAX5B_002253	SMAX5B_001923	ENSSMAP00000026213	ENSSMAP00000018640	Putative nitrogen permease regulator 2-like protein-like isoform 4.	Putative regulatory-associated protein of mTOR.	0.854
SMAX5B_002253	SMAX5B_002549	ENSSMAP00000026213	ENSSMAP00000005398	Putative nitrogen permease regulator 2-like protein-like isoform 4.	Ras-related GTP binding C.	0.944
SMAX5B_002253	SMAX5B_004116	ENSSMAP00000026213	ENSSMAP00000029064	Putative nitrogen permease regulator 2-like protein-like isoform 4.	Ras-related GTP binding A isoform 2.	0.995
SMAX5B_002253	SMAX5B_011722	ENSSMAP00000026213	ENSSMAP00000021264	Putative nitrogen permease regulator 2-like protein-like isoform 4.	Putative folliculin.	0.580
SMAX5B_002253	SMAX5B_012282	ENSSMAP00000026213	ENSSMAP00000021971	Putative nitrogen permease regulator 2-like protein-like isoform 4.	Putative ragulator complex protein LAMTOR4.	0.937
SMAX5B_002253	SMAX5B_013451	ENSSMAP00000026213	ENSSMAP00000031894	Putative nitrogen permease regulator 2-like protein-like isoform 4.	Putative ragulator complex protein LAMTOR1-like.	0.916
SMAX5B_002253	SMAX5B_013556	ENSSMAP00000026213	ENSSMAP00000026448	Putative nitrogen permease regulator 2-like protein-like isoform 4.	Ragulator complex protein LAMTOR2.	0.970
SMAX5B_002253	SMAX5B_014866	ENSSMAP00000026213	ENSSMAP00000031182	Putative nitrogen permease regulator 2-like protein-like isoform 4.	Putative ragulator complex protein LAMTOR5.	0.934
SMAX5B_002253	SMAX5B_015875	ENSSMAP00000026213	ENSSMAP00000001793	Putative nitrogen permease regulator 2-like protein-like isoform 4.	Putative ras-related GTP-binding protein C-like.	0.944
SMAX5B_002253	SMAX5B_016923	ENSSMAP00000026213	ENSSMAP00000021399	Putative nitrogen permease regulator 2-like protein-like isoform 4.	Putative ragulator complex protein LAMTOR3 isoform 2.	0.936
SMAX5B_002549	SMAX5B_001923	ENSSMAP00000005398	ENSSMAP00000018640	Ras-related GTP binding C.	Putative regulatory-associated protein of mTOR.	0.988