STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSSMAP00000022912Histone deacetylase 6. (1101 aa)    
Predicted Functional Partners:
SMAX5B_016833
Putative AT-rich interactive domain-containing protein 4B isoform 2.
    
 0.910
SMAX5B_001062
Putative AT-rich interactive domain-containing protein 4A isoform 2.
    
 0.910
SMAX5B_003989
H2AFY MGC137823 isoform 3; Belongs to the histone H2A family.
   
 0.894
SMAX5B_008496
Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.
   
 0.894
SMAX5B_005125
Putative paired amphipathic helix protein Sin3a.
   
 0.812
SMAX5B_022248
Putative paired amphipathic helix protein Sin3b-like.
   
 0.812
SMAX5B_005627
Putative paired amphipathic helix protein Sin3a-like isoform 2.
   
 0.812
SMAX5B_018361
Putative E3 SUMO-protein ligase RanBP2.
  
 0.782
SMAX5B_007542
Putative transitional endoplasmic reticulum ATPase-like; Belongs to the AAA ATPase family.
   
 0.744
SMAX5B_010967
Transitional endoplasmic reticulum ATPase; Belongs to the AAA ATPase family.
   
 0.744
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.