ENSSMAP00000023230 protein (Scophthalmus maximus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSSMAP00000023230

annotation not available (516 aa)

Predicted Functional Partners:

MSL3

0.881

SMAX5B_019122

0.843

SMAX5B_015601

0.791

SMAX5B_009444

0.791

ENSSMAP00000019236

0.790

SMAX5B_021936

0.790

NCSTN

0.772

SMAX5B_009122

0.760

SMAX5B_012064

0.738

SMAX5B_003206

0.735

Your Current Organism:

Scophthalmus maximus

NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSMAP00000019236	ENSSMAP00000023230	ENSSMAP00000019236	ENSSMAP00000023230	annotation not available	annotation not available	0.790
ENSSMAP00000019236	MSL3	ENSSMAP00000019236	ENSSMAP00000005806	annotation not available	Putative male-specific lethal 3-like isoform 2.	0.975
ENSSMAP00000019236	SMAX5B_003206	ENSSMAP00000019236	ENSSMAP00000023145	annotation not available	Putative mucin-5AC-like.	0.790
ENSSMAP00000023230	ENSSMAP00000019236	ENSSMAP00000023230	ENSSMAP00000019236	annotation not available	annotation not available	0.790
ENSSMAP00000023230	MSL3	ENSSMAP00000023230	ENSSMAP00000005806	annotation not available	Putative male-specific lethal 3-like isoform 2.	0.881
ENSSMAP00000023230	NCSTN	ENSSMAP00000023230	ENSSMAP00000016534	annotation not available	Putative nicastrin.	0.772
ENSSMAP00000023230	SMAX5B_003206	ENSSMAP00000023230	ENSSMAP00000023145	annotation not available	Putative mucin-5AC-like.	0.735
ENSSMAP00000023230	SMAX5B_009122	ENSSMAP00000023230	ENSSMAP00000015328	annotation not available	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.760
ENSSMAP00000023230	SMAX5B_009444	ENSSMAP00000023230	ENSSMAP00000028859	annotation not available	Putative nuclear RNA export factor 1.	0.791
ENSSMAP00000023230	SMAX5B_012064	ENSSMAP00000023230	ENSSMAP00000001207	annotation not available	Putative gamma-secretase subunit PEN-2 isoform 2.	0.738
ENSSMAP00000023230	SMAX5B_015601	ENSSMAP00000023230	ENSSMAP00000005062	annotation not available	Protein S100; Belongs to the S-100 family.	0.791
ENSSMAP00000023230	SMAX5B_019122	ENSSMAP00000023230	ENSSMAP00000011832	annotation not available	Putative mastermind-like protein 1.	0.843
ENSSMAP00000023230	SMAX5B_021936	ENSSMAP00000023230	ENSSMAP00000025247	annotation not available	Putative E3 ubiquitin-protein ligase MSL2-like.	0.790
MSL3	ENSSMAP00000019236	ENSSMAP00000005806	ENSSMAP00000019236	Putative male-specific lethal 3-like isoform 2.	annotation not available	0.975
MSL3	ENSSMAP00000023230	ENSSMAP00000005806	ENSSMAP00000023230	Putative male-specific lethal 3-like isoform 2.	annotation not available	0.881
MSL3	SMAX5B_003206	ENSSMAP00000005806	ENSSMAP00000023145	Putative male-specific lethal 3-like isoform 2.	Putative mucin-5AC-like.	0.881
MSL3	SMAX5B_021936	ENSSMAP00000005806	ENSSMAP00000025247	Putative male-specific lethal 3-like isoform 2.	Putative E3 ubiquitin-protein ligase MSL2-like.	0.983
NCSTN	ENSSMAP00000023230	ENSSMAP00000016534	ENSSMAP00000023230	Putative nicastrin.	annotation not available	0.772
NCSTN	SMAX5B_003206	ENSSMAP00000016534	ENSSMAP00000023145	Putative nicastrin.	Putative mucin-5AC-like.	0.772
NCSTN	SMAX5B_009122	ENSSMAP00000016534	ENSSMAP00000015328	Putative nicastrin.	Presenilin; Probable subunit of the gamma-secretase complex, an endoprotease complex that catalyzes the intramembrane cleavage of integral membrane proteins such as Notch receptors. Belongs to the peptidase A22A family.	0.996