STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_008744Putative DNA nucleotidylexotransferase; Belongs to the DNA polymerase type-X family. (498 aa)    
Predicted Functional Partners:
SMAX5B_003540
Putative DNA repair protein XRCC1; Belongs to the G-protein coupled receptor 1 family.
   
 0.923
SMAX5B_007184
DNA ligase.
  
 0.859
SMAX5B_022695
DNA ligase.
  
 0.856
SMAX5B_020350
Putative X-ray repair cross-complementing protein 6.
    
 0.826
SMAX5B_021549
DNA ligase.
  
 0.817
SMAX5B_000733
Putative bifunctional polynucleotide phosphatase/kinase.
    
 0.800
SMAX5B_013132
Putative meiotic recombination protein REC114 isoform 2.
    
 0.800
SMAX5B_010511
DNA polymerase; DNA polymerase that functions in several pathways of DNA repair. Involved in base excision repair (BER) responsible for repair of lesions that give rise to abasic (AP) sites in DNA. Also contributes to DNA double-strand break repair by non-homologous end joining and homologous recombination. Has both template-dependent and template- independent (terminal transferase) DNA polymerase activities. Has also a 5'-deoxyribose-5-phosphate lyase (dRP lyase) activity.
  
  
0.791
SMAX5B_001712
Putative DNA polymerase lambda; Belongs to the DNA polymerase type-X family.
  
  
0.779
SMAX5B_006294
Putative flap endonuclease 1-like.
   
 0.774
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.