RASGEF1B protein (Scophthalmus maximus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RASGEF1B

RasGEF domain family member 1B. (473 aa)

Predicted Functional Partners:

SMAX5B_019065

0.697

SMAX5B_009065

0.589

SMAX5B_021601

0.589

SMAX5B_017037

0.542

SMAX5B_017570

0.542

SMAX5B_009812

0.538

SMAX5B_010310

0.538

SMAX5B_013109

0.538

SMAX5B_013654

0.538

RASGRP1

0.536

Your Current Organism:

Scophthalmus maximus

NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RASGEF1B	RASGRP1	ENSSMAP00000024211	ENSSMAP00000008797	RasGEF domain family member 1B.	Putative RAS guanyl-releasing protein 1-like.	0.536
RASGEF1B	SMAX5B_009065	ENSSMAP00000024211	ENSSMAP00000018338	RasGEF domain family member 1B.	Putative son of sevenless-like 2-like.	0.589
RASGEF1B	SMAX5B_009812	ENSSMAP00000024211	ENSSMAP00000002198	RasGEF domain family member 1B.	Ras-specific guanine nucleotide-releasing factor 1.	0.538
RASGEF1B	SMAX5B_010310	ENSSMAP00000024211	ENSSMAP00000008909	RasGEF domain family member 1B.	Putative ras-specific guanine nucleotide-releasing factor 2.	0.538
RASGEF1B	SMAX5B_013109	ENSSMAP00000024211	ENSSMAP00000011893	RasGEF domain family member 1B.	Ras-specific guanine nucleotide-releasing factor 1.	0.538
RASGEF1B	SMAX5B_013654	ENSSMAP00000024211	ENSSMAP00000019409	RasGEF domain family member 1B.	Putative ras-specific guanine nucleotide-releasing factor 2-like.	0.538
RASGEF1B	SMAX5B_017037	ENSSMAP00000024211	ENSSMAP00000013280	RasGEF domain family member 1B.	Ras-specific guanine nucleotide-releasing factor RalGPS1.	0.542
RASGEF1B	SMAX5B_017570	ENSSMAP00000024211	ENSSMAP00000028974	RasGEF domain family member 1B.	Putative ras-specific guanine nucleotide-releasing factor RalGPS2.	0.542
RASGEF1B	SMAX5B_019065	ENSSMAP00000024211	ENSSMAP00000014749	RasGEF domain family member 1B.	Putative rap guanine nucleotide exchange factor 2.	0.697
RASGEF1B	SMAX5B_021601	ENSSMAP00000024211	ENSSMAP00000034464	RasGEF domain family member 1B.	Putative son of sevenless-like 1.	0.589
RASGRP1	RASGEF1B	ENSSMAP00000008797	ENSSMAP00000024211	Putative RAS guanyl-releasing protein 1-like.	RasGEF domain family member 1B.	0.536
RASGRP1	SMAX5B_009065	ENSSMAP00000008797	ENSSMAP00000018338	Putative RAS guanyl-releasing protein 1-like.	Putative son of sevenless-like 2-like.	0.586
RASGRP1	SMAX5B_009812	ENSSMAP00000008797	ENSSMAP00000002198	Putative RAS guanyl-releasing protein 1-like.	Ras-specific guanine nucleotide-releasing factor 1.	0.504
RASGRP1	SMAX5B_010310	ENSSMAP00000008797	ENSSMAP00000008909	Putative RAS guanyl-releasing protein 1-like.	Putative ras-specific guanine nucleotide-releasing factor 2.	0.504
RASGRP1	SMAX5B_013109	ENSSMAP00000008797	ENSSMAP00000011893	Putative RAS guanyl-releasing protein 1-like.	Ras-specific guanine nucleotide-releasing factor 1.	0.504
RASGRP1	SMAX5B_013654	ENSSMAP00000008797	ENSSMAP00000019409	Putative RAS guanyl-releasing protein 1-like.	Putative ras-specific guanine nucleotide-releasing factor 2-like.	0.504
RASGRP1	SMAX5B_017037	ENSSMAP00000008797	ENSSMAP00000013280	Putative RAS guanyl-releasing protein 1-like.	Ras-specific guanine nucleotide-releasing factor RalGPS1.	0.504
RASGRP1	SMAX5B_017570	ENSSMAP00000008797	ENSSMAP00000028974	Putative RAS guanyl-releasing protein 1-like.	Putative ras-specific guanine nucleotide-releasing factor RalGPS2.	0.504
RASGRP1	SMAX5B_019065	ENSSMAP00000008797	ENSSMAP00000014749	Putative RAS guanyl-releasing protein 1-like.	Putative rap guanine nucleotide exchange factor 2.	0.678
RASGRP1	SMAX5B_021601	ENSSMAP00000008797	ENSSMAP00000034464	Putative RAS guanyl-releasing protein 1-like.	Putative son of sevenless-like 1.	0.586