STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_007493Putative transcription elongation factor mitochondrial. (387 aa)    
Predicted Functional Partners:
SMAX5B_022253
DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the phage and mitochondrial RNA polymerase family.
    
 
 0.957
SMAX5B_007579
Putative U3 small nucleolar RNA-associated protein 6-like.
 
    
 0.599
SMAX5B_012708
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
   
  
 0.566
SMAX5B_016062
Putative cytokine receptor-like factor 3.
      
 0.515
SMAX5B_001614
Coiled-coil domain-containing protein 58.
   
    0.472
SMAX5B_021325
Putative neurofibromin.
      
 0.440
SMAX5B_012465
Putative mitochondrial ribonuclease P protein 1.
   
  
 0.439
SMAX5B_015770
mTERF domain-containing protein 1 mitochondrial.
   
  
 0.438
SMAX5B_002434
Putative 39S ribosomal protein L39 mitochondrial.
   
   0.427
ENSSMAP00000001958
Mitochondrial transcription termination factor 4.
   
  
 0.407
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.