STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_014101Putative E3 ubiquitin-protein ligase TRAIP. (460 aa)    
Predicted Functional Partners:
SMAX5B_002376
Putative Fanconi anemia group D2 protein.
   
 
 0.642
SMAX5B_000435
Peptidylprolyl isomerase-like 5.
   
  
 0.633
MCM7
DNA replication licensing factor MCM7; Acts as component of the mcm2-7 complex (mcm complex) which is the putative replicative helicase essential for 'once per cell cycle' DNA replication initiation and elongation in eukaryotic cells. The active ATPase sites in the mcm2-7 ring are formed through the interaction surfaces of two neighboring subunits such that a critical structure of a conserved arginine finger motif is provided in trans relative to the ATP-binding site of the Walker A box of the adjacent subunit. The six ATPase active sites, however, are likely to contribute differential [...]
    
 
 0.569
SMAX5B_002036
Putative ubiquitin-like modifier-activating enzyme 5 isoform 4.
     
 0.565
SMAX5B_010328
CDC45-related protein isoform 2.
   
  
 0.550
SMAX5B_019131
Putative endonuclease 8-like 3.
   
  
 0.549
TRAF2
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 
 0.536
SMAX5B_013823
Putative TNF receptor-associated factor 2.
    
 
 0.536
SMAX5B_022056
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 
 0.536
SMAX5B_022017
Ubiquitin carboxyl-terminal hydrolase.
    
 
 0.532
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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