SMAX5B_008697 protein (Scophthalmus maximus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMAX5B_008697

Putative epithelial cell adhesion molecule isoform 2. (307 aa)

Predicted Functional Partners:

SMAX5B_004327

0.652

SMAX5B_011253

0.513

SMAX5B_022269

0.513

SMAX5B_005770

0.513

ENSSMAP00000025010

0.513

SMAX5B_004305

0.411

SMAX5B_019933

0.401

SMAX5B_009240

0.400

Your Current Organism:

Scophthalmus maximus

NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSMAP00000025010	SMAX5B_004327	ENSSMAP00000025010	ENSSMAP00000031185	Claudin 7a.	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	0.844
ENSSMAP00000025010	SMAX5B_005770	ENSSMAP00000025010	ENSSMAP00000012545	Claudin 7a.	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	0.856
ENSSMAP00000025010	SMAX5B_008697	ENSSMAP00000025010	ENSSMAP00000025169	Claudin 7a.	Putative epithelial cell adhesion molecule isoform 2.	0.513
ENSSMAP00000025010	SMAX5B_011253	ENSSMAP00000025010	ENSSMAP00000004114	Claudin 7a.	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	0.844
ENSSMAP00000025010	SMAX5B_019933	ENSSMAP00000025010	ENSSMAP00000033332	Claudin 7a.	Claudin.	0.859
SMAX5B_004305	SMAX5B_008697	ENSSMAP00000023998	ENSSMAP00000025169	Putative transmembrane 4 L6 family member 5-like.	Putative epithelial cell adhesion molecule isoform 2.	0.411
SMAX5B_004327	ENSSMAP00000025010	ENSSMAP00000031185	ENSSMAP00000025010	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	Claudin 7a.	0.844
SMAX5B_004327	SMAX5B_005770	ENSSMAP00000031185	ENSSMAP00000012545	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	0.846
SMAX5B_004327	SMAX5B_008697	ENSSMAP00000031185	ENSSMAP00000025169	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	Putative epithelial cell adhesion molecule isoform 2.	0.652
SMAX5B_004327	SMAX5B_011253	ENSSMAP00000031185	ENSSMAP00000004114	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	0.844
SMAX5B_004327	SMAX5B_019933	ENSSMAP00000031185	ENSSMAP00000033332	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	Claudin.	0.860
SMAX5B_004327	SMAX5B_022269	ENSSMAP00000031185	ENSSMAP00000005305	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	Putative claudin-1-like.	0.845
SMAX5B_005770	ENSSMAP00000025010	ENSSMAP00000012545	ENSSMAP00000025010	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	Claudin 7a.	0.856
SMAX5B_005770	SMAX5B_004327	ENSSMAP00000012545	ENSSMAP00000031185	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	0.846
SMAX5B_005770	SMAX5B_008697	ENSSMAP00000012545	ENSSMAP00000025169	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	Putative epithelial cell adhesion molecule isoform 2.	0.513
SMAX5B_005770	SMAX5B_011253	ENSSMAP00000012545	ENSSMAP00000004114	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	0.844
SMAX5B_005770	SMAX5B_019933	ENSSMAP00000012545	ENSSMAP00000033332	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	Claudin.	0.877
SMAX5B_005770	SMAX5B_022269	ENSSMAP00000012545	ENSSMAP00000005305	Claudin; Plays a major role in tight junction-specific obliteration of the intercellular space, through calcium-independent cell-adhesion activity; Belongs to the claudin family.	Putative claudin-1-like.	0.847
SMAX5B_008697	ENSSMAP00000025010	ENSSMAP00000025169	ENSSMAP00000025010	Putative epithelial cell adhesion molecule isoform 2.	Claudin 7a.	0.513
SMAX5B_008697	SMAX5B_004305	ENSSMAP00000025169	ENSSMAP00000023998	Putative epithelial cell adhesion molecule isoform 2.	Putative transmembrane 4 L6 family member 5-like.	0.411