SMAX5B_020462 protein (Scophthalmus maximus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMAX5B_020462

Putative elongation factor 1-delta-like; Belongs to the EF-1-beta/EF-1-delta family. (705 aa)

Predicted Functional Partners:

SMAX5B_002485

0.999

SMAX5B_002148

0.988

SMAX5B_012091

0.985

tpt1

0.940

SMAX5B_021258

0.930

SMAX5B_005162

0.926

RPS3A

0.924

SMAX5B_014336

0.919

SLC25A38

0.912

SMAX5B_000679

0.910

Your Current Organism:

Scophthalmus maximus

NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPS3A	SLC25A38	ENSSMAP00000006110	ENSSMAP00000004907	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	Mitochondrial glycine transporter; Mitochondrial glycine transporter that imports glycine into the mitochondrial matrix. Plays an important role in providing glycine for the first enzymatic step in heme biosynthesis, the condensation of glycine with succinyl-CoA to produce 5-aminolevulinate (ALA) in the miochondrial matrix. Required during erythropoiesis. Belongs to the universal ribosomal protein uS2 family.	0.999
RPS3A	SMAX5B_000679	ENSSMAP00000006110	ENSSMAP00000007033	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	40S ribosomal protein S3 isoform 2; Belongs to the universal ribosomal protein uS3 family.	0.999
RPS3A	SMAX5B_002148	ENSSMAP00000006110	ENSSMAP00000000014	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	Putative elongation factor 1-beta; Belongs to the EF-1-beta/EF-1-delta family.	0.977
RPS3A	SMAX5B_002485	ENSSMAP00000006110	ENSSMAP00000002002	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	Elongation factor 1-gamma.	0.971
RPS3A	SMAX5B_005162	ENSSMAP00000006110	ENSSMAP00000020340	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	Putative methionine--tRNA ligase cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.708
RPS3A	SMAX5B_012091	ENSSMAP00000006110	ENSSMAP00000015714	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	Putative valine--tRNA ligase-like isoform 4.	0.598
RPS3A	SMAX5B_014336	ENSSMAP00000006110	ENSSMAP00000014144	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999
RPS3A	SMAX5B_020462	ENSSMAP00000006110	ENSSMAP00000029440	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	Putative elongation factor 1-delta-like; Belongs to the EF-1-beta/EF-1-delta family.	0.924
RPS3A	SMAX5B_021258	ENSSMAP00000006110	ENSSMAP00000000717	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	Putative 60S ribosomal protein L35.	0.999
RPS3A	tpt1	ENSSMAP00000006110	ENSSMAP00000011768	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	Translationally-controlled tumor protein homolog; Involved in calcium binding and microtubule stabilization. Belongs to the TCTP family.	0.969
SLC25A38	RPS3A	ENSSMAP00000004907	ENSSMAP00000006110	Mitochondrial glycine transporter; Mitochondrial glycine transporter that imports glycine into the mitochondrial matrix. Plays an important role in providing glycine for the first enzymatic step in heme biosynthesis, the condensation of glycine with succinyl-CoA to produce 5-aminolevulinate (ALA) in the miochondrial matrix. Required during erythropoiesis. Belongs to the universal ribosomal protein uS2 family.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
SLC25A38	SMAX5B_000679	ENSSMAP00000004907	ENSSMAP00000007033	Mitochondrial glycine transporter; Mitochondrial glycine transporter that imports glycine into the mitochondrial matrix. Plays an important role in providing glycine for the first enzymatic step in heme biosynthesis, the condensation of glycine with succinyl-CoA to produce 5-aminolevulinate (ALA) in the miochondrial matrix. Required during erythropoiesis. Belongs to the universal ribosomal protein uS2 family.	40S ribosomal protein S3 isoform 2; Belongs to the universal ribosomal protein uS3 family.	0.999
SLC25A38	SMAX5B_002148	ENSSMAP00000004907	ENSSMAP00000000014	Mitochondrial glycine transporter; Mitochondrial glycine transporter that imports glycine into the mitochondrial matrix. Plays an important role in providing glycine for the first enzymatic step in heme biosynthesis, the condensation of glycine with succinyl-CoA to produce 5-aminolevulinate (ALA) in the miochondrial matrix. Required during erythropoiesis. Belongs to the universal ribosomal protein uS2 family.	Putative elongation factor 1-beta; Belongs to the EF-1-beta/EF-1-delta family.	0.973
SLC25A38	SMAX5B_002485	ENSSMAP00000004907	ENSSMAP00000002002	Mitochondrial glycine transporter; Mitochondrial glycine transporter that imports glycine into the mitochondrial matrix. Plays an important role in providing glycine for the first enzymatic step in heme biosynthesis, the condensation of glycine with succinyl-CoA to produce 5-aminolevulinate (ALA) in the miochondrial matrix. Required during erythropoiesis. Belongs to the universal ribosomal protein uS2 family.	Elongation factor 1-gamma.	0.988
SLC25A38	SMAX5B_005162	ENSSMAP00000004907	ENSSMAP00000020340	Mitochondrial glycine transporter; Mitochondrial glycine transporter that imports glycine into the mitochondrial matrix. Plays an important role in providing glycine for the first enzymatic step in heme biosynthesis, the condensation of glycine with succinyl-CoA to produce 5-aminolevulinate (ALA) in the miochondrial matrix. Required during erythropoiesis. Belongs to the universal ribosomal protein uS2 family.	Putative methionine--tRNA ligase cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.	0.922
SLC25A38	SMAX5B_012091	ENSSMAP00000004907	ENSSMAP00000015714	Mitochondrial glycine transporter; Mitochondrial glycine transporter that imports glycine into the mitochondrial matrix. Plays an important role in providing glycine for the first enzymatic step in heme biosynthesis, the condensation of glycine with succinyl-CoA to produce 5-aminolevulinate (ALA) in the miochondrial matrix. Required during erythropoiesis. Belongs to the universal ribosomal protein uS2 family.	Putative valine--tRNA ligase-like isoform 4.	0.791
SLC25A38	SMAX5B_014336	ENSSMAP00000004907	ENSSMAP00000014144	Mitochondrial glycine transporter; Mitochondrial glycine transporter that imports glycine into the mitochondrial matrix. Plays an important role in providing glycine for the first enzymatic step in heme biosynthesis, the condensation of glycine with succinyl-CoA to produce 5-aminolevulinate (ALA) in the miochondrial matrix. Required during erythropoiesis. Belongs to the universal ribosomal protein uS2 family.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999
SLC25A38	SMAX5B_020462	ENSSMAP00000004907	ENSSMAP00000029440	Mitochondrial glycine transporter; Mitochondrial glycine transporter that imports glycine into the mitochondrial matrix. Plays an important role in providing glycine for the first enzymatic step in heme biosynthesis, the condensation of glycine with succinyl-CoA to produce 5-aminolevulinate (ALA) in the miochondrial matrix. Required during erythropoiesis. Belongs to the universal ribosomal protein uS2 family.	Putative elongation factor 1-delta-like; Belongs to the EF-1-beta/EF-1-delta family.	0.912
SLC25A38	SMAX5B_021258	ENSSMAP00000004907	ENSSMAP00000000717	Mitochondrial glycine transporter; Mitochondrial glycine transporter that imports glycine into the mitochondrial matrix. Plays an important role in providing glycine for the first enzymatic step in heme biosynthesis, the condensation of glycine with succinyl-CoA to produce 5-aminolevulinate (ALA) in the miochondrial matrix. Required during erythropoiesis. Belongs to the universal ribosomal protein uS2 family.	Putative 60S ribosomal protein L35.	0.999
SLC25A38	tpt1	ENSSMAP00000004907	ENSSMAP00000011768	Mitochondrial glycine transporter; Mitochondrial glycine transporter that imports glycine into the mitochondrial matrix. Plays an important role in providing glycine for the first enzymatic step in heme biosynthesis, the condensation of glycine with succinyl-CoA to produce 5-aminolevulinate (ALA) in the miochondrial matrix. Required during erythropoiesis. Belongs to the universal ribosomal protein uS2 family.	Translationally-controlled tumor protein homolog; Involved in calcium binding and microtubule stabilization. Belongs to the TCTP family.	0.961