STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_015415Zinc finger CCCH domain-containing protein 18. (1199 aa)    
Predicted Functional Partners:
SMAX5B_019619
Putative adenylate kinase 9 isoform 2.
    
  0.878
SMAX5B_000427
Uncharacterized protein.
    
 0.876
SMAX5B_022324
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
   
 0.824
SMAX5B_018361
Putative E3 SUMO-protein ligase RanBP2.
    
 0.717
SMAX5B_002807
Retinoblastoma-binding protein 5.
    
 0.712
SMAX5B_016962
Ash2-like.
    
 0.712
SMAX5B_019267
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
    
 0.703
SMAX5B_021281
Putative nuclear pore complex protein Nup133.
    
 0.701
SMAX5B_020988
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
 0.691
SMAX5B_001485
Putative hepatocyte growth factor activator.
   
  0.690
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.