STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_004166Putative ribonuclease ZC3H12B. (847 aa)    
Predicted Functional Partners:
SMAX5B_015288
Putative NF-kappa-B essential modulator.
    
  0.635
SMAX5B_021391
Putative optineurin.
    
  0.635
SMAX5B_005886
Putative ciliogenesis-associated TTC17-interacting protein; Belongs to the peptidase C14A family.
   
 
  0.484
SMAX5B_006108
Caspase 8; Belongs to the peptidase C14A family.
   
 
  0.484
SMAX5B_018196
Caspase 10; Belongs to the peptidase C14A family.
   
 
  0.484
SMAX5B_014623
Putative SAP domain-containing ribonucleoprotein.
   
  
 0.482
SMAX5B_016519
THO complex subunit 3.
      
 0.465
SMAX5B_019862
Putative zinc finger CCCH domain-containing protein 4.
      
 0.454
ENSSMAP00000009288
annotation not available
    
   0.426
ENSSMAP00000023908
NEDD8 ubiquitin like modifier, like.
    
   0.426
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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