STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PNPT1Putative polyribonucleotide nucleotidyltransferase 1 mitochondrial isoform 3. (770 aa)    
Predicted Functional Partners:
ENSSMAP00000016721
Ferredoxin-fold anticodon binding domain containing 1.
  
  
 0.918
SMAX5B_014190
tRNA-nucleotidyltransferase 1 mitochondrial; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
 0.895
SMAX5B_014891
Putative exosome component 10 isoform 2.
   
 
 0.894
TSFM
Elongation factor Ts, mitochondrial; Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome. Belongs to the EF-Ts family.
  
  
 0.879
ENSSMAP00000010889
Mitochondrial ribosomal protein L17.
  
  
 0.868
SMAX5B_009873
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
  
 0.867
SMAX5B_008728
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
  
  
 0.867
SMAX5B_002294
Putative 39S ribosomal protein L20 mitochondrial; Belongs to the bacterial ribosomal protein bL20 family.
  
  
 0.866
SMAX5B_002147
Tr-type G domain-containing protein.
  
  
 0.856
ENSSMAP00000000069
annotation not available
  
  
 0.856
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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