SMAX5B_012034 protein (Scophthalmus maximus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMAX5B_012034

VIR_N domain-containing protein. (1794 aa)

Predicted Functional Partners:

SMAX5B_019586

0.997

SMAX5B_002424

0.982

SMAX5B_000873

0.952

SMAX5B_004022

0.885

SMAX5B_003756

0.842

SMAX5B_013487

0.832

SMAX5B_007335

0.762

SMAX5B_014948

0.754

SMAX5B_006872

0.748

SMAX5B_021048

0.734

Your Current Organism:

Scophthalmus maximus

NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMAX5B_000873	SMAX5B_002424	ENSSMAP00000002502	ENSSMAP00000011525	Putative E3 ubiquitin-protein ligase Hakai-like.	Putative zinc finger CCCH domain-containing protein 13-like.	0.730
SMAX5B_000873	SMAX5B_003756	ENSSMAP00000002502	ENSSMAP00000010251	Putative E3 ubiquitin-protein ligase Hakai-like.	Putative N6-adenosine-methyltransferase 70 kDa subunit; Belongs to the MT-A70-like family.	0.678
SMAX5B_000873	SMAX5B_004022	ENSSMAP00000002502	ENSSMAP00000027113	Putative E3 ubiquitin-protein ligase Hakai-like.	Putative THO complex subunit 2 isoform 2.	0.594
SMAX5B_000873	SMAX5B_006872	ENSSMAP00000002502	ENSSMAP00000014824	Putative E3 ubiquitin-protein ligase Hakai-like.	Putative YTH domain-containing protein 1.	0.521
SMAX5B_000873	SMAX5B_007335	ENSSMAP00000002502	ENSSMAP00000014914	Putative E3 ubiquitin-protein ligase Hakai-like.	Putative N6-adenosine-methyltransferase subunit METTL14; Belongs to the MT-A70-like family.	0.678
SMAX5B_000873	SMAX5B_012034	ENSSMAP00000002502	ENSSMAP00000030388	Putative E3 ubiquitin-protein ligase Hakai-like.	VIR_N domain-containing protein.	0.952
SMAX5B_000873	SMAX5B_013487	ENSSMAP00000002502	ENSSMAP00000028344	Putative E3 ubiquitin-protein ligase Hakai-like.	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...]	0.538
SMAX5B_000873	SMAX5B_014948	ENSSMAP00000002502	ENSSMAP00000031165	Putative E3 ubiquitin-protein ligase Hakai-like.	Putative RNA-binding protein 15.	0.482
SMAX5B_000873	SMAX5B_019586	ENSSMAP00000002502	ENSSMAP00000028021	Putative E3 ubiquitin-protein ligase Hakai-like.	Putative pre-mRNA-splicing regulator WTAP.	0.974
SMAX5B_002424	SMAX5B_000873	ENSSMAP00000011525	ENSSMAP00000002502	Putative zinc finger CCCH domain-containing protein 13-like.	Putative E3 ubiquitin-protein ligase Hakai-like.	0.730
SMAX5B_002424	SMAX5B_003756	ENSSMAP00000011525	ENSSMAP00000010251	Putative zinc finger CCCH domain-containing protein 13-like.	Putative N6-adenosine-methyltransferase 70 kDa subunit; Belongs to the MT-A70-like family.	0.736
SMAX5B_002424	SMAX5B_006872	ENSSMAP00000011525	ENSSMAP00000014824	Putative zinc finger CCCH domain-containing protein 13-like.	Putative YTH domain-containing protein 1.	0.677
SMAX5B_002424	SMAX5B_007335	ENSSMAP00000011525	ENSSMAP00000014914	Putative zinc finger CCCH domain-containing protein 13-like.	Putative N6-adenosine-methyltransferase subunit METTL14; Belongs to the MT-A70-like family.	0.744
SMAX5B_002424	SMAX5B_012034	ENSSMAP00000011525	ENSSMAP00000030388	Putative zinc finger CCCH domain-containing protein 13-like.	VIR_N domain-containing protein.	0.982
SMAX5B_002424	SMAX5B_013487	ENSSMAP00000011525	ENSSMAP00000028344	Putative zinc finger CCCH domain-containing protein 13-like.	U6 small nuclear RNA (adenine-(43)-N(6))-methyltransferase; RNA N6-methyltransferase that methylates adenosine residues of a subset of RNAs and plays a key role in S-adenosyl-L-methionine homeostasis by regulating expression of MAT2A transcripts. Able to N6- methylate a subset of mRNAs and U6 small nuclear RNAs (U6 snRNAs). In contrast to the METTL3-METTL14 heterodimer, only able to methylate a limited number of RNAs: requires both a 5'UACAGAGAA-3' nonamer sequence and a specific RNA structure. In presence of S-adenosyl-L-methionine, binds the 3'-UTR region of MAT2A mRNA and specifical [...]	0.608
SMAX5B_002424	SMAX5B_014948	ENSSMAP00000011525	ENSSMAP00000031165	Putative zinc finger CCCH domain-containing protein 13-like.	Putative RNA-binding protein 15.	0.776
SMAX5B_002424	SMAX5B_019586	ENSSMAP00000011525	ENSSMAP00000028021	Putative zinc finger CCCH domain-containing protein 13-like.	Putative pre-mRNA-splicing regulator WTAP.	0.997
SMAX5B_002424	SMAX5B_021048	ENSSMAP00000011525	ENSSMAP00000015161	Putative zinc finger CCCH domain-containing protein 13-like.	THO complex subunit 4.	0.921
SMAX5B_003756	SMAX5B_000873	ENSSMAP00000010251	ENSSMAP00000002502	Putative N6-adenosine-methyltransferase 70 kDa subunit; Belongs to the MT-A70-like family.	Putative E3 ubiquitin-protein ligase Hakai-like.	0.678
SMAX5B_003756	SMAX5B_002424	ENSSMAP00000010251	ENSSMAP00000011525	Putative N6-adenosine-methyltransferase 70 kDa subunit; Belongs to the MT-A70-like family.	Putative zinc finger CCCH domain-containing protein 13-like.	0.736