SMAX5B_012412 protein (Scophthalmus maximus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMAX5B_012412

Putative transcription factor SPT20-like. (833 aa)

Predicted Functional Partners:

SMAX5B_012103

0.998

SMAX5B_020238

0.998

SMAX5B_020054

0.998

TADA1

0.997

SMAX5B_008687

0.996

SMAX5B_003272

0.996

SMAX5B_019971

0.991

SMAX5B_004985

0.990

SMAX5B_014306

0.990

SMAX5B_000558

0.989

Your Current Organism:

Scophthalmus maximus

NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMAX5B_000558	SMAX5B_003272	ENSSMAP00000024951	ENSSMAP00000018646	Putative STAGA complex 65 subunit gamma.	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	0.988
SMAX5B_000558	SMAX5B_004985	ENSSMAP00000024951	ENSSMAP00000012982	Putative STAGA complex 65 subunit gamma.	Putative TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L.	0.991
SMAX5B_000558	SMAX5B_008687	ENSSMAP00000024951	ENSSMAP00000003045	Putative STAGA complex 65 subunit gamma.	Putative transcription initiation protein SPT3-like.	0.988
SMAX5B_000558	SMAX5B_012103	ENSSMAP00000024951	ENSSMAP00000009811	Putative STAGA complex 65 subunit gamma.	Transcription initiation factor TFIID subunit 12 isoform 2.	0.987
SMAX5B_000558	SMAX5B_012412	ENSSMAP00000024951	ENSSMAP00000030638	Putative STAGA complex 65 subunit gamma.	Putative transcription factor SPT20-like.	0.989
SMAX5B_000558	SMAX5B_014306	ENSSMAP00000024951	ENSSMAP00000020617	Putative STAGA complex 65 subunit gamma.	Putative transcriptional adapter 3.	0.941
SMAX5B_000558	SMAX5B_019971	ENSSMAP00000024951	ENSSMAP00000006812	Putative STAGA complex 65 subunit gamma.	Transcriptional adapter.	0.895
SMAX5B_000558	SMAX5B_020054	ENSSMAP00000024951	ENSSMAP00000027234	Putative STAGA complex 65 subunit gamma.	SAGA-associated factor 29-like.	0.964
SMAX5B_000558	SMAX5B_020238	ENSSMAP00000024951	ENSSMAP00000015332	Putative STAGA complex 65 subunit gamma.	Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.	0.987
SMAX5B_000558	TADA1	ENSSMAP00000024951	ENSSMAP00000017771	Putative STAGA complex 65 subunit gamma.	Putative transcriptional adapter 1.	0.929
SMAX5B_003272	SMAX5B_000558	ENSSMAP00000018646	ENSSMAP00000024951	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	Putative STAGA complex 65 subunit gamma.	0.988
SMAX5B_003272	SMAX5B_004985	ENSSMAP00000018646	ENSSMAP00000012982	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	Putative TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L.	0.990
SMAX5B_003272	SMAX5B_008687	ENSSMAP00000018646	ENSSMAP00000003045	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	Putative transcription initiation protein SPT3-like.	0.998
SMAX5B_003272	SMAX5B_012103	ENSSMAP00000018646	ENSSMAP00000009811	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	Transcription initiation factor TFIID subunit 12 isoform 2.	0.999
SMAX5B_003272	SMAX5B_012412	ENSSMAP00000018646	ENSSMAP00000030638	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	Putative transcription factor SPT20-like.	0.996
SMAX5B_003272	SMAX5B_014306	ENSSMAP00000018646	ENSSMAP00000020617	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	Putative transcriptional adapter 3.	0.995
SMAX5B_003272	SMAX5B_019971	ENSSMAP00000018646	ENSSMAP00000006812	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	Transcriptional adapter.	0.982
SMAX5B_003272	SMAX5B_020054	ENSSMAP00000018646	ENSSMAP00000027234	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	SAGA-associated factor 29-like.	0.997
SMAX5B_003272	SMAX5B_020238	ENSSMAP00000018646	ENSSMAP00000015332	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	Transformation/transcription domain-associated protein; Belongs to the PI3/PI4-kinase family.	0.999
SMAX5B_003272	TADA1	ENSSMAP00000018646	ENSSMAP00000017771	Transcription initiation factor TFIID subunit 10; TFIID is a multimeric protein complex that plays a central role in mediating promoter responses to various activators and repressors; Belongs to the TAF10 family.	Putative transcriptional adapter 1.	0.994