STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_011280RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events. (366 aa)    
Predicted Functional Partners:
SMAX5B_008251
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.789
PABPN1L
Putative embryonic polyadenylate-binding protein 2-B-like isoform 2.
  
 0.767
SRSF6
Serine and arginine rich splicing factor 6.
  
 
 0.760
ENSSMAP00000024086
annotation not available
  
 
0.745
SMAX5B_014399
Putative RNA-binding protein Musashi-like 1-like.
  
 
 0.743
ENSSMAP00000009497
Serine and arginine rich splicing factor 2a.
  
 
0.742
SMAX5B_022324
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
  
 
 0.736
SMAX5B_001736
Pabpn1 protein isoform 2.
  
 0.732
SMAX5B_018764
RNA-binding protein Musashi-like 1 Long.
  
 
 0.721
SMAX5B_011302
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
    
 0.717
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.