STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMAX5B_019862Putative zinc finger CCCH domain-containing protein 4. (1375 aa)    
Predicted Functional Partners:
SMAX5B_021655
Putative symplekin.
   
 0.950
ENSSMAP00000001017
Nudix hydrolase 21.
    
 0.949
SMAX5B_000047
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.949
ENSSMAP00000003606
Cleavage stimulation factor, 3' pre-RNA, subunit 3.
   
 0.949
SMAX5B_007466
Putative pre-mRNA 3'-end-processing factor FIP1.
    
 0.949
SMAX5B_016344
Putative cleavage and polyadenylation specificity factor subunit 1-like.
   
 0.949
SMAX5B_011236
Cleavage stimulation factor subunit 1.
   
 0.946
CPSF3
Cleavage and polyadenylation specificity factor subunit 3.
   
 0.942
SMAX5B_009407
Putative cleavage stimulation factor subunit 2-like.
   
 0.923
SMAX5B_002365
RNA polymerase II subunit A C-terminal domain phosphatase SSU72.
   
 0.909
Your Current Organism:
Scophthalmus maximus
NCBI taxonomy Id: 52904
Other names: Pleuronectes maximus, Psetta maxima, Rhombus maximus, S. maximus, turbot
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.